Berthold Lumat Lb 9507 Manual Meat
Dec 11, 2007. After 30 s of preincubation, the light emission was measured for 60 s with a Lumat LB 9507 (Berthold). Since on the one hand the activity of the V1VO holoenzyme was reduced in the presence of ADP and on the other hand ADP was tightly bound to the dissociated V1 complex, the question arose.
The present invention relates to an immunostimulatory complexed single-stranded RNA, comprising at least one RNA (molecule) complexed with one or more oligopeptides, wherein the oligopeptide has a length of 8 to 15 amino acids and has the formula (Arg) l(Lys) m(His) n(Orn) o(Xaa) x. Additionally, pharmaceutical compositions and kits comprising the inventive complexed RNA, as well as the use of the inventive immunostimulatory complexed single-stranded RNA for modulating, preferably inducing or enhancing, an immune response are disclosed herein. Transfection of nucleic acids into cells or tissues of patients by methods of gene transfer is a central method of molecular medicine and plays a critical role in therapy and prevention of numerous diseases. Methods for transfection of nucleic acids may lead to immune stimulation of the tissue or organism. Alternatively or additionally, transfection of nucleic acids may be followed by processing of the information coded by the nucleic acids introduced, i.e. Translation of desired polypeptides or proteins.
DNA or RNA as nucleic acids form alternative approaches to gene therapy. Transfection of nucleic acids may also lead to modulation, e.g. Suppression or enhancement of gene expression, dependent on the type of nucleic acid transfected.
Transfection of these nucleic acids is typically carried out by using methods of gene transfer. Methods of gene transfer into cells or tissues have been intensively studied in the last decades, however in part with limited success. Well known methods include physical or physico-chemical methods such as (direct) injection of (naked) nucleic acids or biolistic gene transfer. Biolistic gene transfer (also known as biolistic particle bombardment) is a method developed at Cornell University, that allows introducing genetic material into tissues or culture cells. Biolistic gene transfer is typically accomplished by surface coating metal particles, such as gold or silver particles, and shooting these metal particles, comprising the adsorbed DNA, into cells by using a gene gun.
However, biolistic gene transfer methods have not yet been shown to work with RNA, probably due to its fast degradation. Furthermore, these methods are not suitable for in vivo applications, a matter which represents a severe practical limitation. An alternative physical or physico-chemical method includes the method of in vitro electroporation. In vitro electroporation is based on the use of high-voltage current to make cell membranes permeable to allow the introduction of new DNA or RNA into the cell. Therefore, cell walls are typically weakened prior to transfection either by using chemicals or by a careful process of freezing to make them 'electrocompetent'. If electrocompetent bacteria or cells (e.g.
Eukaryotic cells) and DNA (or RNA) are mixed together, the plasmid can be transferred into the cell by using an electric discharge to carry the DNA (or RNA) into cells in the path of the spark crossing the reaction chamber. Another alternative physical or physico-chemical method includes use of nanoplexes (nanoparticular systems), lipoplexes (liposomal systems), or the use of polyplexes or cationic polymers. Such nanoplexes (nanoparticular systems) involve use of polyacrylates, polyamides, polystyrene, cyanoacrylates, polylactat (PLA), poly(lactic-co-glycolic acid) (PLGA), polyethyl, etc., as carrier systems for the transport of nucleic acids into cells or tissues. Lipoplexes or liposomal systems typically involve use of cationic lipids, which are capable to mimick a cell membrane. Thereby, the positively charged moiety of the lipids interacts with the negatively charged moiety of the nucleic acids and thus enables fusion with the cell membrane. Lipoplexes or liposomal systems include e.g. DOTMA, DOPE, DOSPA, DOTAP, DC-Chol, EDMPC, etc.
Polyplexes (cationic polymers) typically form a complex with negatively charged nucleic acids leading to a condensation of nucleic acids and protecting these nucleic acids against degradation. Transport into cells using polyplexes (cationic polymers) typically occurs via receptor mediated endocytosis. Thereby, the DNA is coupled to a distinct molecule, such as Transferrin, via e.g.
The polyplex poly-L-lysine (PLL), which binds to a surface receptor and triggers endocytosis. Polyplexes (cationic polymers) include e.g. Poly-L-lysine (PLL), chitosan, polyethylenimine (PEI), polydimethylaminoethylmethacrylate (PD-MAEMA), polyamidoamine (PAMAM). Other well known physical or physico-chemical methods of gene transfer into cells or organisms include methods such as virus based transfection methods.
As a particular example, DNA viruses may be used as DNA vehicles. Because of their infection properties, such viruses have a very high transfection rate. The viruses typically used are genetically modified in a way, that no functional infectious particles are formed in the transfected cell. In spite of this safety precaution, however, a risk of uncontrolled propagation of the therapeutically active genes introduced and the viral genes cannot be ruled out e.g. Because of possible recombination events.
More advantageous in this context is the use of so called translocatory proteins or of protein transduction domains (PTDs) for the transport of macromolecules into cells or tissues. Translocatory proteins are considered as a group of peptides capable of effecting transport of macromolecules between cells (translocatory proteins), such as HIV tat (HIV), antennapedia (Drosophila antennapedia), HSV VP22 (Herpes simplex), FGF or lactoferrin, etc. In contrast, protein transduction domains (PTDs) are considered as a group of peptides capable of directing proteins and peptides covalently bound to these sequences into a cell via the cell membrane ( Leifert and Whitton: Translocatory proteins and protein transduction domains: a critical analysis of their biological effects and the underlying mechanisms. Molecular Therapy Vol. 8 No.1 2003).
Common to translocatory proteins as well as to PTDs is a basic region, which is regarded as mainly responsible for transport of the fusion peptides since it is capable of binding polyanions such as nucleic acids. Without being bound thereto, PTDs may act similar to cationic transfection reagents using receptor dependent non-saturatable adsorptive endocytosis. PTDs are typically coupled to proteins or peptides in order to effect or enhance a CTL response when administering a peptide based vaccine (see review: Melikov and Chernomordik, Arginine-rich cell penetrating peptides: from endosomal uptake to nuclear delivery, Cell. Protein transduction domains (PTDs) are sometimes also termed 'cell penetrating peptides' (CPPs) due to their capability of penetrating the cell membrane and thus to effect the transport of (macro-) molecules into cells.
CPPs are small peptides and typically comprise a high content of basic amino acids and exhibit a length of 7 to 30 amino acids. Macromolecules, which have been shown to be transported into cells via CPPs, include peptides as well as DNA, siRNA or PNAs (peptide nucleic acids), wherein the CPPs are typically bonded to these macromolecules via a covalent bond and transfected into the cells. Although cell penetrating peptides (CPPs) have been successfully used to mediate intracellular delivery of a wide variety of molecules of pharmacological interest both in vitro and in vivo, the mechanisms by which cellular uptake occurs still remains unclear. The group of CPPs is highly diverse and consists of amphipathic, helical peptides such as transportan, penetratin, hydrophobic peptides such as MTS, VP22, MAP, KALA, PpTG20, prolin-rich peptides, MPG-peptides, Pep-1, L-oligomers, calcitonin-peptides, or cationic, hydrophilic arginine-rich peptides, including arginine-rich CPPs, which mediate cellular uptake of (covalently) conjugated molecules via binding to proteoglycanes of the cell, such as the transduction domain of the HIV-1 Tat protein (Review: Deshayes et al. Cell-penetrating peptides: tools for intracellular delivery of therapeutics.
Particularly, arginine-rich CPPs are described as vehicles for proteins or DNA, e.g. Plasmid DNA, etc. Poly-arginines may also be used for the transport of (macro-) molecules into cells, which typically comprises a length of at least 60 to 80 amino acids (in particular arginines), more typically from 1000 to 15000 amino acids, and thus represents a high molecular mass compound. Even though the cellular uptake mechanism for CPPs in general remains unclear, endocytosis is suggested as an uptake mechanism for poly-arginine.
Endocytosis is a cellular process by which macromolecules may enter a cell without passing through the cell membrane, wherein three different endocytotic mechanisms have been suggested (chlathrin-dependent endocytosis, caveolin-dependent endocytosis and/or F actin-dependent endocytosis, see e.g. Review: Melikov and Chernomordik, Arginine-rich cell penetrating peptides: from endosomal uptake to nuclear delivery, Cell. Without being bound to any theory, during endocytosis the CPP-complexed macromolecule first binds to the negatively charged cell surface glycosaminoglycans (GAGs), including heparans (HS). Then, the CPP-bound macromolecule enters cell by chlathrin-dependent endocytosis, caveolin-dependent endocytosis and/or F actin-dependent endocytosis, e.g.
By folding of the membrane around the CPP-bound macromolecule outside the cell. This results in the formation of a saclike vesicle into which the CPP-bound macromolecule is incorporated. Trafficking of the CPP-bound macromolecule through late endosomes and/or Golgi and/or endoplasmic reticulum (ER) delivers the CPP-bound macromolecule into the cytoplasm, wherein this stage may involve CPP-induced opening of the transient pores in the lipid bilayer. Alternatively, the CPP-complexed macromolecule may be transported to other locations in the cell, e.g.
Into the endosom, dependent on the mode of action required for the specific purpose. As an example, TLR-7 and TLR-8 receptors are located in the endosome.
Thus, transfection of cells with immunostimulatory RNA, which may e.g. Be ligands of Toll-like receptors (TLRs) selected from ligands of TLR1 - TLR13 (Toll-like receptors: TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TLR10, TLR11, TLR12 or TLR13) may lead to transport to the endosomes and (depeding on the specific interaction and the interaction partners) to e.g. Immunostimulation by the RNA ligand. For transfection of cells with macromolecules, such as DNA, peptides or proteins, high molecular weight polypeptides such as poly-L-arginines (e.g.
Typically having a MW of about 5000 Da to 15 kDa) or poly-L-lysines (e.g. Typically having a MW of about 54 kDa) as well as high molecular weight PEI (polyethyleneimin) (e.g. Typically having a MW of about 25 kDa) were used according to the art (see also Bettinger et al., Nucleic Acids Research, Vol. However, high molecular weight poly-L-lysine and PEI appeared to be ineffective as carrier molecules. Further, when using high molecular weight poly-L-arginines at high concentrations, toxic effects were observed which lead to activation of the complement system.
Thus, efforts were undertaken to develop low molecular weight transfection agents, such as, e.g., low molecular weight poly-arginines. However, such low molecular weight poly-arginines typically exhibit a low stability of the carrier-cargo-complex, i.e. The complex formed of, e.g., a poly-arginine as carrier and a DNA molecule as a cargo.
Thus, McKenzie et al. ( McKenzie et al. Actrix Technical 2000 Download there. A potent new class of reductively activated peptide gene delivery agents; The Journal of Biological Chemistry Vol. 14, 2000) tried to increase stability of peptide-DNA-complexes by crosslinking these peptides via glutaraldehyde to the DNA, thereby forming a Schiff's base.
However, such crosslinking results in extremely slow dissociation of the complex in the cell and, consequently, expression of the encoded protein is extremely low over time. In order to circumvent this problem, McKenzie et al. (2000, supra) introduced cysteine residues into the CPP carrier, which stabilize the complex by forming disulfide bonds between CPP and DNA. Upon transfection, these disulfide bonds are cleaved in the cell due to the reducing conditions inside the cell, resulting in increased expression of the encoded peptides. However, such crosslinking is elaborative and may cause further undesired modifications of the DNA. Furthermore, low-molecular weight PEI (e.g. Typically having a MW of about 2000 Da) and low-molecular weight poly-L-lysines (e.g.
Typically having a MW of about 3400 Da) may be used for transfection of such macromolecules as mentioned above. However, even though an improved transfection was observed for low-molecular weight PEI or poly-L-lysines in these experiments, expression was not detectable due to formation of extremely stable complexes of these carrier molecules with the DNA. As a result, these carrier molecules do not appear to exhibit dissociation of their complexed DNA, a necessary step for translation and expression of the encoded protein (see Bettinger et al., (2001), supra). Transport of DNA by CPPs was further shown by Niidome et al. (The Journal of Biological Chemistry, Vol 272., No.
Niidome et al. (1997, supra) disclose the use of CPPs, particularly of cationic alpha-helical peptides with a defined arginine content of 25% and a length of 12 or 24 amino acids, respectively, for the transport of plasmid DNA as cargo moiety. As a result, it was found that long and/or hydrophobic peptides can strongly bind to the DNA and effect transport of DNA into cells. Moreover, Niidome et al. (Bioconjugate Chem. 1999, 10, 773-780) showed that peptides having a length of 16 to 17 amino acids were most efficient for the transport of plasmid DNA.
However, when using small peptides (e.g. Of about 12 amino acids) as CPPs, transfection efficiency of DNA into cells turned out to decrease significantly. In order to enhance cellular transfection efficiency of short arginine molecules, Futaki et al. (Bioconjugate Chem.
2001, 12, 1005-1011) used stearylated oligopeptides (Arg) n having a length of 4-16 amino acids. These oligopeptides were used in transfection experiments in comparison to non-stearylated oligopeptides (Arg) n having a length of 4-16 amino acids and poly-arginine (MW 5000-15000) for in vitro transfer of plasmid DNA coding for luciferase.
Accordingly, carrier peptides used for transfection were mixed with plasmid DNA and formed a carrier/cargo complex. A translocation optimum was demonstrated for stearylated (Arg) n having a length of 8 arginines, whereas arginines having a length of 6-7 and 9-15 arginines showed a significantly reduced cellular transport activity. Furthermore, transport activity of non-stearylated arginines and poly-arginine exhibited poor results, indicating loss of transport activity when using these carrier peptides. The observed difference of transfection efficiency shown by Futaki et al. (2001, supra) for stearylated and non-stearylated carrier peptides is thus due to the presence of lipid moieties, which significantly change the chemical properties of the CPPs used in these experiments. According to Kim et al. ( Kim et al., Basic peptide system for efficient delivery of foreign genes, Biochimica et Biophysica Acta 1640 (2003) 129-136), short arginine carrier peptides such as (Arg) 9 to (Arg) 15 may be used for complexation and cellular transfection of DNA, encoding green fluorescent protein PEGFP-N3.
When using arginines (Arg) 9 to (Arg) 15, optimum results were obtained with (Arg) 15 showing increasing cellular transfection efficiency from (Arg) 9 to (Arg) 15. These results indicate that optimum transport properties for transfecting cells with DNA may be achieved with an (Arg) n carrier peptide, wherein n is far beyond 15. However, applicability of short arginine peptides for transfection purposes was exclusively documented for DNA molecules as cargo moiety by Kim et al. (2003, supra). Veldhoen et al.
(2006) also published the use of specific CPPs in a non-covalent complex for cellular transfection of double stranded short siRNA sequences ( Veldhoen et al., Cellular delivery of small interfering RNA by a non-covalently attached cell penetrating peptide: quantitative analysis of uptake and biological effect. Nucleic Acids Research 2006). Peptides used by Veldhoen et al. (2006) were MPGalpha (Ac-GALFLAFLAAALSLMGLWSQPKKKRKV-Cya) and MPGalpha-mNLS (Ac-GALFLAFLAAALSLMGLWSQPKSKRKV-Cya). These specific peptides were additionally modified with an acetyl moiety (Ac) at the N-terminus and a cysteamide moiety at the C-terminus.
Veldhoen et al. (2006) were able to show transfer of double-stranded siRNA, having a length of about 18 to 40 nucleotides, into cells by using the afore-mentioned carrier peptides. RNA transfer represents an important tool in modern molecular medicine and exhibits superior properties over DNA cell transfection, since DNA molecules may lead to serious problems. Application of DNA molecules bears the risk that the DNA integrates into the host genome. Integration of foreign DNA into the host genome can have an influence on expression of the host genes and possibly triggers expression of an oncogene or destruction of a tumor suppressor gene. A gene - and therefore the gene product - which is essential to the host may also be inactivated by integration of the foreign DNA into the coding region of this gene. There is a particular danger if integration of the DNA takes place into a gene which is involved in regulation of cell growth.
In this case, the host cell may enter into a degenerated state and lead to cancer or tumor formation. Such undesired integration into the DNA may be even more problematic, if the DNA transfected into the cell comprises a potent promoter, such as the viral CMV promoter. Integration of such promoters into the genome of the treated cell can lead to undesirable changes in the regulation of gene expression in the cell. A further disadvantage is that the DNA molecules remain in the cell nucleus for a long time, either as an episome or, as mentioned, integrated into the host genome. This phenomenon leads both to production of transgenic protein which is not limited or cannot be limited in time and to danger of associated tolerance towards this transgenic protein. The development of anti-DNA antibodies ( Gilkeson et al., J Clin Invest 95, 1398-1402 (1995)) and the induction of autoimmune diseases can furthermore be triggered by injection of DNA.
All these risks listed are associated with application of DNA. In contrast, they do not occur if RNA, particularly mRNA, is used instead of DNA. For example, mRNA does not integrate into the host genome, no viral sequences, such as promoters etc., are required for effective transcription etc. A disadvantage resulting from the use of RNA may be due to its instability as compared to DNA (RNA-degrading enzymes, so-called RNases (ribonucleases), in particular, but also numerous other processes which destabilize RNA are responsible for the instability of RNA).
However, methods for stabilizing RNA have meanwhile been disclosed in the art, such as, for example, in WO 03/051401, WO 02/098443, WO 99/14346,, and. Methods have also been developed for protecting RNA against degradation by ribonucleases, either using liposomes ( Martinon et al., Eur J Immunol 23, 1719-1722 (1993)) or an intra-cytosolic in vivo administration of the nucleic acid with a ballistic device (gene gun) ( Vassilev et al., Vaccine 19, 2012-2019 (2001)). This object of the present invention is achieved by the embodiments of the present invention as characterized by the claims. In the context of the present invention, a complexed RNA is to be understood as an RNA (molecule) as defined herein, preferably an mRNA, which is complexed to the one or more oligopeptides according to empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x by forming a non-covalent complex between RNA and oligopeptide(s). Herein, 'non-covalent' means that a reversible association of RNA and oligopeptide is formed by non-covalent interactions of these molecules, wherein the molecules are associated together by any type of interaction of electrons, other than a covalent bond, e.g. By van der Waals-bonds, i.e.
A weak electrostatic attraction arising from a nonspecific attractive force of the complexed molecules. Association of an RNA and at least one oligopeptide is in equilibrium with dissociation of that complex. Intracellularly, without being bound to theory, the equilibrium appears to be shifted towards dissociated RNA and oligopeptide(s). The oligopeptide of the immunostimulatory complexed single-stranded RNA according to the present invention has the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x, as defined above wherein l + m + n +o + x = 8-15, and I, m, n or o independently of each other may be any number selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15, or any range formed by two of these values, provided that the overall content of (the basic amino acids) Arg, Lys, His and/or Orn represents at least 50% (e.g. At least 51, 52, 53, 54, 55, 56, 57, 58, or 59%) at least 60% (e.g.
At least 61, 62, 63, 64, 65, 66, 67, 68, or 69%), at least 70% (e.g. At least 71, 72, 73, 74, 75, 76, 77, 78, or 79%), at least 80% (e.g. At least 81, 82, 83, 84, 85, 86, 87, 88, or 89%) at least 90% (e.g. At least 91, 92, 93, 94, 95, 96, 97, 98, or 99%), or even 100% of all amino acids of the oligopeptide of the complexed RNA according to the present invention. The amino acids Arg, Lys, His and Orn (three letter code) are to be understood as the amino acids arginine, lysine, histidine and ornithine, respectively. In this context, ornithine is an amino acid whose structure is NH 2-CH 2-CH 2-CH 2-CHNH 2-COOH. Ornithine was artificially incorporated as the 21 st amino acid and does not belong to the 'natively occurring' 20 amino acids in the sense that ornithine is not an amino acid coded for by DNA, and, accordingly, is not involved in primary protein synthesis.
However, ornithine is provided by enzymatic reaction starting from L-arginine. It is believed not to be a part of the genetic code because polypeptides containing unprotected ornithines undergo spontaneous lactamization. Ornithine is to be regarded as a basic amino acid since it is one of the products of the reaction of the enzyme Arginase on L-arginine, creating urea. According to a further preferred embodiment the (single) amino acids of the oligopeptide of the immunostimulatory complexed single-stranded RNA of the present invention, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x (formula I) as shown above, may occur in any frequency as defined above for the empirical formula, i.e. Each basic amino acid (as well as Xaa) may occur in the above defined empirical formula within the above defined values or ranges, wherein any range may be formed from by two of the values as defined above.
However, it is particularly preferred, if the content of the basic amino acid Arg in the above empricial formula is at least 10%, more preferably at least 20%, even more preferably at least 30%, 40% or even 50%, even more preferably at least 60%, 70%, 80% 90% or even 100% with respect to the entire empirical formula. According to another particularly preferred embodiment the content of the basic amino acid Lys in the above empricial formula is at least 10%, more preferably at least 20%, even more preferably at least 30%, 40% or even 50%, even more preferably at least 60%, 70%, 80% 90% or even 100% with respect to the entire empirical formula. According to a further particularly preferred embodiment the content of the basic amino acid His in the above empricial formula is at least 10%, more preferably at least 20%, even more preferably at least 30%, 40% or even 50%, even more preferably at least 60%, 70%, 80%, 90% or even 100% with respect to the entire empirical formula. According to one other particularly preferred embodiment the content of the basic amino acid Orn in the above empricial formula is at least 10%, more preferably at least 20%, even more preferably at least 30%, 40% or even 50%, even more preferably at least 60%, 70%, 80%, 90% or even 100% with respect to the entire empirical formula. The amino acids in the above formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x, i.e. Arg, Lys, His and/or Orn may furthermore be selected from the native (= naturally occurring) amino acids Arg, Lys, His and Orn or from non-native (= not naturally occurring) amino acids derived from these amino acids.
As a non-native (= not naturally occurring) amino acid derived from the amino acids Arg, Lys, His and Orn, any known derivative of these amino acids may be used, which has been chemically modified, provided these derivatives are not toxic for cells or organisms, when provided with the above oligopeptide. (Such derivatives of amino acids are distributed by different companies; see e.g.
Sigma Aldrich (see •. Furthermore, the oligopeptide of the immunostimulatory complexed single-stranded RNA according to the present invention may contain an amino acid Xaa in the above empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x, which may be any amino acid selected from native (= naturally occurring) or non-native (= not naturally occurring) amino acids except of Arg, Lys, His or Orn. Preferably, Xaa may be selected, without being limited thereto, from naturally occurring neutral (and hydrophobic) amino acids, i.e. Amino acids, which have neutral (and hydrophobic) side chains, such as alanine (Ala), valine (Val), leucine (Leu), isoleucine (Ile), proline (Pro), tryptophane (Trp), phenylalanine (Phe), or methionine (Met), and/or from naturally occurring neutral (and polar) amino acids, i.e.
Amino acids, which have neutral (and polar) side chains, such as glycine (Gly), serine (ser), threonine (Thr), tyrosine (Tyr), cysteine (Cys), asparagine (Asn), or glutamine (Glu), and/or from naturally occurring acidic amino acids, i.e. Amino acids, which have acidic side chains, such as aspartic acid (Asp) or glutamic acid (Glu). Preferably the oligopeptide of the immunostimulatory complexed single-stranded RNA according to the present invention may contain an amino acid Xaa in the above empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x, which is selected from amino acids having no acidic side chain. Even more preferably, Xaa in empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x is selected from amino acids having a neutral side chain, i.e. From amino acids, which have a neutral (and hydrophobic) side chain and/or from amino acids, which have a neutral (and polar) side chain, as defined above. Additionally, any known derivative of amino acids may be used for Xaa in the above empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x, i.e.
Amino acids, which have been chemically modified, provided these derivatives are not toxic for cells or organisms, when provided with the above oligopeptide. (Such derivatives of amino acids are distributed by different companies, see e.g. Sigma Aldrich (see Xaa is typically present in the above formula in a content of 0-30%, 0-40% or 0-50% of all amino acids of the entire oligopeptide sequence, i.e. The overall content of Xaa may not exceed 30%, 40% or 50% of all amino acids of the entire oligopeptide sequence, preferably it may not exceed 20%, even more preferably not 10%, and most preferably not 5% of all amino acids of the entire oligopeptide sequence.
Thus, x in the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as shown above may be any number selected from 0, 1, 2, 3, 4, 5, 6, 7 or 8, provided, that the content of Xaa does not exceed the above indicated value of 30% (or less), 40% or 50% of all entire amino acids of the oligopeptide of the complexed RNA. Typically, the amino acids Arg, Lys, His, Orn and Xaa of the oligopeptide of the immunostimulatory complexed single-stranded RNA according to the present invention, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as indicated above, may be positioned at any position of the oligopeptide sequence. Accordingly, empirical formula (I) does not determine any specific order of amino acids, but is rather intended to reflect the type of amino acids and their frequency of occurrence in the peptide, indicating that the peptide chain contains a number of I Arg residues, m Lys residues, n His residues, o Orn residues and x Xaa residues, without specifying any order of these residues within the peptide chain. However, it is preferred, that the above oligopeptide comprises amino acids at one or, preferably, both terminal ends, which do not comprise an acidic side chain. More preferably, the above oligopeptide sequence comprises neutral or basic amino acids at one or, preferably, both terminal ends, even more preferably basic amino acids at one or both terminal ends.
In a further preferred embodiment, the oligopeptide according to the general formula given above contains at least two, more preferably at least three, at least four or even at least five terminal basic residues, in particular Arg, Orn or Lys, at either terminus. According to just another preferred embodiment, the oligopeptide according to the general formula given above preferably comprises no cationic amino acids (i.e. No Arg, Orn or Lys) at one or, preferably, at both terminal ends, even more preferably no cationic amino acids (i.e. No Arg, Orn or Lys) at both terminal ends. In other words, one, or more preferably both, terminal ends of the oligopeptide according to the general formula given above may comprise any non-cationic amino acid as defined herein, provided that such non-cationic amino acid is selected from an amino acid except Arg, Orn or Lys or any variant or derivative of these cationic amino acids.
The terminal ends may comprise e.g. One, at least two, at least three, at least four, at least five or even more basic non-cationic residues as defined above starting from the N- and/or C-terminal end of the particular sequence. According to a further preferred embodiment, one or both terminal ends of the oligopeptide of the immunostimulatory complexed single-stranded RNA according to the present invention may comprise at least one histidine residue at one or both of its terminal ends, e.g. The oligopeptide of the immunostimulatory complexed single-stranded RNA according to the present invention may comprise one, two, three or more histidine residues in consecutive order at one or both terminal ends, provided that the overall length of the oligopeptide is limited to 8 to 15 amino acids as defined above. However, basic amino acid residues of the oligopeptide of the immunostimulatory complexed single-stranded RNA according to the formula given above are selected from Arg, Lys, His or Orn as defined above and typically occur in a cluster of at least 2, preferably at least 3, 4, 5, or even 6 or more basic amino acids as defined herein.
According to a particularly preferred embodiment, such clusters may also comprise 6, 7, 8, 9, 10, 11, 12, 13, 14 or even 15 amino acids. Such a cluster of basic amino acids, preferably a cluster of at least 3, 4, 5, or even 6 or more basic amino acids preferably creates a basic surface or binding region within the oligopeptide, which provides advantageous properties to the oligopeptide as a carrier peptide for the immunostimulatory complexed single-stranded RNA according to the present invention. According to a further preferred embodiment the oligopeptide of the immunostimulatory complexed single-stranded RNA of the present invention, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x (formula I) as shown above, may be, without being restricted thereto, selected from following subgroup. This subgroup exemplarily defines specific inventive oligopeptides, which fall under empirical formula I as defined above, wherein the following formulae (as with empirical formula (I)) do not specify any amino acid order, but are intended to reflect empirical formulae by exclusively specifying the (number of) amino acids as components of the respective peptide.
Accordingly, empirical formula Arg (7-14)Lys 1 is intended to mean that peptides falling under this formula contain 7 to 14 Arg residues and 1 Lys residue of whatsoever order. If the peptides contain 7 Arg residues and 1 Lys residue, all variants having 7 Arg residues and 1 Lys residue are encompassed. The Lys residue may therefore be positioned anywhere in the e.g. 8 amino acid long sequence composed of 7 Arg and 1 Lys residues. The subgroup preferably comprises. According to another preferred embodiment, the oligopeptide of the immunostimulatory complexed single-stranded RNA of the present invention, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as shown above, is selected from the subgroup consisting of general formulas Arg 9 (also termed R9), Arg 9His 3 (also termed R9H3), His 3Arg 9His 3 (also termed H3R9H3), TyrSerSerArg 9SerSerTyr (also termed YSSR9SSY), His 3Arg 9SerSerTyr (also termed H3R9SSY), (ArgLysHis) 4 (also termed (RKH)4), Tyr(ArgLysHis) 2Arg (also termed Y(RKH)2R). Typical modifications may thus include e.g.
The use of modified amino acids as defined above. Furthermore, the terminal amino acid residues of the oligopeptide, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as shown above, with their carboxy (C-terminus) and their amino (N-terminus) groups (as well as carboxy or amide amino acid side chain groups, see above) may be present in their protected (e.g. The C terminus protected by an amide group) and/or unprotected form, using appropriate amino or carboxyl protecting groups. Also, acid-addition salts of the oligopeptide, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as shown above, may be used.
Common acid addition salts are hydrohalic acid salts, i.e., HBr, HI, or more preferably, HCl. The at least one oligopeptide of the immunostimulatory complexed single-stranded RNA (molecule) of the present invention, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as shown above, may furthermore be modified to bind to or be coupled to at least one specific ligand, wherein the at least one specific ligand may be bound to or coupled to one or both terminal ends of the at least one oligopeptide. The at least one specific ligand bound to or coupled to one or both terminal ends of the oligopeptide may be identical or different and may be selected from any compound capable to bind to or interact with a receptor or a protein or a protein/receptor complex, e.g. At the cell surface, e, e.g., without being limited thereto, RGD-peptide, transferrin or mannose, etc. Other preferred modifications resulting in derivatives of the oligopeptide, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as shown above, are based on carbohydrates and/or lipids which may be covalently coupled to the oligopeptide.
It is preferred to couple carbohydrates and/or lipids to serine, threonine, asparagine, glutamine or tyrosine or glutamate or aspartate via their reactive side chain moieties. Alternatively, carbohydrates and/or lipids may also be linked to the terminal moieties of the oligopeptide as defined herein. Furthermore, the oligopeptide may be coupled to a functionally different peptide or protein moiety, which may also stabilize the oligopeptide and/or may serve to improve the transport properties of oligopeptide in body fluids, in particular blood. Suitable peptides or proteins may e.g. Be selected from albumin, transferrin etc., which may be directly coupled to the oligopeptide, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as shown above, or via a peptide or organic linker sequence.
Preferably, these peptides or proteins are linked to one of the termini of the oligopeptide. In this context, it is to be noted that a modification of the oligopeptide with lipids, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as shown above, does typically not include the use of (saturated or non-saturated) fatty acids, particularly not the use of long chain (saturated or non-saturated) fatty acids (in particular with a chain length of >C 12, >C 14 or >C 16). Thus, in the context of the present invention, modification of the oligopeptide with fatty acids, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as shown above, does not form an integral part of the present invention.
However, if fatty acids are used at all to modify the carrier peptide, thex may be selected, without being limited thereto, from the group comprising e.g. In order to circumvent the problem of degradation of the oligopeptide, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as shown above, according to another embodiment of the present invention a retro-inverso isomer of the above oligopeptide composed of D amino acids or at least partially composed of D amino acids may be used. The term 'retro-inverso isomer' refers to an isomer of a linear peptide in which the direction of the sequence is reversed and the chirality of each amino acid residue is inverted (see, e.g., Jameson et al., Nature, 368, 744-746 (1994); Brady et al., Nature, 368, 692-693 (1994)). With respect to the parent peptide, the retro-inverso peptide is assembled in reverse order of amino acids, typically with F-moc amino acid derivatives. Typically, the crude peptides may be purified by reversed phase HPLC. Other modifications, which may be introduced into the oligopeptide, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as shown above, relate to modifications of the peptide backbone. Preferably, the modified oligopeptides are scaffold mimetics.
Their backbone is different from the natural occurring backbone, while their side-chain structures are identical with the oligopeptides or their fragments, variants or derivatives. In general, scaffold mimetics exhibit a modification of one or more of the backbone chain members (NH, CH, CO), either as substitution (preferably) or as an insertion. Substituents are e.g. (I) - O-, -S-, or -CH 2- instead of -NH-; (II) -N-, C-Alkyl-, or -BH- instead of -CHR- and (III) -CS-, -CH 2-, -SO n-, -P=O(OH)-, or -B(OH)- instead of -CO. A peptide mimetic of an oligopeptide, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as defined herein, may be a combination of each of these modifications. In particular, modifications of each the groups I, II and III may be combined.
In a peptide mimetic each backbone chain member may be modified or, alternatively, only a certain number of chain members may be exchanged for a non-naturally occurring moiety. Preferably, all backbone chain members of an oligopeptide, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as defined herein, of either -NH-, -CHR- or -CO are exchanged for another non-naturally occurring group. In case the amide bond (-NH-CO-) of the oligopeptide backbone is substituted (in the entire molecule or at least in one single position), preferable substitution moieties are bioisosteric, e.g.
Retro-inverse amide bonds (-CO-NH-), hydroxyl ethylene (-CH(OH)-CH 2-), alkene (-CH 2=CH-), carba (-CH 2-CH 2-) and/or (-P=O(OH)-CH 2-). Alternatively, backbone chain elongation by insertions may occur in a scaffold mimetic of the oligopeptide, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as defined herein, e.g. By moieties flanking the C-alpha atom. On either side of the C-alpha atom e.g. -O-, -S-, -CH-, -NH- may be inserted. Particularly preferred are oligocarbamate peptide backbone structure of the oligopeptide, having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x as defined herein.
Thereby amide bond may be replaced by a carbamate moiety. The monomeric N-protected amino alkyl carbonates are accessible via the corresponding amino acids or amino alcohols. They are converted into active esters, e.g. P-nitro phenyl ester by using the F-moc moiety or a photo sensitive nitroatryloxycarbonyl group by solid phase synthesis. The at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may have any length (preferably dependent on the type of RNA to be applied as a complexed RNA according to the present invention). Without being restricted thereto, the at least one RNA (molecule) may have a length of 5 to 20000 nucleotides, more preferably a length of 5 to 10000 or of 300 to 10000 nucleotides, even more preferably a length of 5 to 5000 nucleotides, and most preferably a length of 20 to 5000, of 50 to 5000, of 100 to 5000 or of 300 to 10000 nucleotides depending on the type of RNA to be transfected (see disclosure below). The at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may be any RNA, preferably, without being limited thereto, a short RNA oligonucleotide (preferable length 5 to 80 or, more preferably 20 to 80 nucleotides), a coding RNA, a siRNA, an antisense RNA, or riboswitches, ribozymes or aptamers.
The at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may also be a circular or linear RNA, preferably a linear RNA. More preferably, the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may be a linear single-stranded RNA. The at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may be a ribosomal RNA (rRNA), a transfer RNA (tRNA), a messenger RNA (mRNA), or a viral RNA (vRNA), preferably a mRNA. The present invention allows all of these RNAs to be transfected into the cell.
In this context, an mRNA is typically an RNA, which is composed of several structural elements, e.g. An optional 5'-UTR region, an upstream positioned ribosomal binding site followed by a coding region, an optional 3'-UTR region, which may be followed by a poly-A tail (and/or a poly-C-tail). An mRNA may occur as a mono-, di-, or even multicistronic RNA, i.e.
An RNA which carries the coding sequences of one, two or more proteins. Such coding sequences in di-, or even multicistronic mRNA may be separated by at least one IRES sequence, e.g.
As defined herein. Short RNA oligonucleotides•. The coding RNA may further encode a protein or a peptide, which may be selected, without being restricted thereto, e.g. From therapeutically active proteins or peptides, tumor antigens, antibodies, immunostimulating proteins or peptides, etc., or from any other protein or peptide suitable for a specific (therapeutic) application, wherein the at least one RNA (molecule) encoding the protein is to be transported into a cell, a tissue or an organism and the protein is expressed subsequently in this cell, tissue or organism. In this context, therapeutically active proteins may be selected from any recombinant or isolated proteins known to a skilled person from the prior art. Without being restricted thereto therapeutically active proteins as encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA as defined herein may be selected from apoptotic factors or apoptosis related proteins including AlF, Apaf e.g. Apaf-1, Apaf-2, Apaf-3, oder APO-2 (L), APO-3 (L), Apopain, Bad, Bak, Bax, Bcl-2, Bcl-x L, Bcl-x S, bik, CAD, Calpain, Caspase e.g.
Alternatively, therapeutically active proteins as encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA as defined herein may also be selected from proteases etc. Which allow to cure a specific disease due to e.g. (over)expression of a dysfunctional or exogenous proteins causing disorders or diseases. Accordingly, the invention may be used to therapeutically introduce the complexed RNA into the organism, which attacks a pathogenic organism (virus, bacteria etc). RNA encoding therapeutic proteases may be used to cleave viral proteins which are essential to the viral assembly or other essential steps of virus production.
Therapeutically active proteins as encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA as defined herein may also be selected from proteins which modulate various intracellular pathways by e.g. Signal transmission modulation (inhibition or stimulation) which may influence pivotal intracellular processes like apoptosis, cell growth etc, in particular with respect to the organism's immune system. Accordingly, immune modulators, e.g. Cytokines, lymphokines, monokines, interferones etc. May be expressed efficiently by the complexed RNA as defined herein. Preferably, these proteins therefore also include, for example, cytokines of class I of the cytokine family that contain 4 position-specific conserved cysteine residues (CCCC) and a conserved sequence motif Trp-Ser-X-Trp-Ser (WSXWS), wherein X represents an unconserved amino acid. Cytokines of class I of the cytokine family include the GM-CSF sub-family, for example IL-3, IL-5, GM-CSF, the IL-6 sub-family, for example IL-6, IL-11, IL-12, or the IL-2 sub-family, for example IL-2, IL-4, IL-7, IL-9, IL-15, etc., or the cytokines IL-1α, IL-1β, IL-10 etc.
By analogy, such proteins can also include cytokines of class II of the cytokine family (interferon receptor family), which likewise contain 4 position-specific conserved cysteine residues (CCCC) but no conserved sequence motif Trp-Ser-X-Trp-Ser (WSXWS). Cytokines of class II of the cytokine family include, for example, IFN-α, IFN-β, IFN-γ, etc. Proteins coded for by the at least one modified (m)RNA (of the inventive immunosuppressive composition) used according to the invention can further include also cytokines of the tumour necrosis family, for example TNF-α, TNF-β, TNF-RI, TNF-RII, CD40, Fas, etc., or cytokines of the chemokine family, which contain 7 transmembrane helices and interact with G-protein, for example IL-8, MIP-1, RANTES, CCR5, CXR4, etc.
Additionally, therapeutically active proteins as encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA as defined herein may also code for antigen specific T cell receptors. The T cell receptor or TCR is a molecule found on the surface of T lymphocytes (or T cells) that is generally responsible for recognizing antigens bound to major histocompatibility complex (MHC) molecules. It is a heterodimer consisting of an alpha and beta chain in 95% of T cells, while 5% of T cells have TCRs consisting of gamma and delta chains. Engagement of the TCR with antigen and MHC results in activation of its T lymphocyte through a series of biochemical events mediated by associated enzymes, co-receptors and specialized accessory molecules. Hence, these proteins allow to specifically target specific antigen and may support the functionality of the immune system due to their targeting properties.
Accordingly, transfection of cells in vivo by administering the at least one RNA (molecule) of the complexed RNA as defined herein coding for these receptors or, preferably, an ex vivo cell transfection approach (e.g. By transfecting specifically certain immune cells), may be pursued. The T cell receptor molecules introduced recognize specific antigens on MHC molecule and may thereby support the immune system's awareness of antigens to be attacked. The therapeutically active proteins, which may be encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA as defined herein, may furthermore comprise an adjuvant protein.
In this context, an adjuvant protein is preferably to be understood as any protein, which is capable to elicit an innate immune response as defined herein. Preferably, such an innate immune response comprises an activation of a pattern recognition receptor, such as e.g. A receptor selected from the Toll-like receptor (TLR) familiy, including e.g. A Toll like receptor selected from human TLR1 to TLR10 or from murine Toll like receptors TLR1 to TLR13. Preferably, an innate immune response is elicited in a mammal, more preferably in a human. Preferably, the adjuvant protein is selected from human adjuvant proteins or from pathogenic adjuvant proteins, in particular from bacterial adjuvant proteins.
In addition, mRNA encoding human proteins involved in adjuvant effects may be used as well. Human adjuvant proteins, which may be encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA as defined herein, typically comprise any human protein, which is capable of eliciting an innate immune response (in a mammal), e.g. As a reaction of the binding of an exogenous TLR ligand to a TLR.
Pathogenic adjuvant proteins, which may be encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA as defined herein, typically comprise any pathogenic (adjuvant) protein, which is capable of eliciting an innate immune response (in a mammal), more preferably selected from pathogenic (adjuvant) proteins derived from bacteria, protozoa, viruses, or fungi, animals, etc., and even more preferably from pathogenic adjuvant proteins selected from the group consisting of, without being limited thereto, bacterial proteins, protozoan proteins (e.g. Profilin - like protein of Toxoplasmagondii), viral proteins, or fungal proteins, animal proteins, etc. In this context, bacterial (adjuvant) proteins which may be encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA as defined herein, may comprise any bacterial protein, which is capable of eliciting an innate immune response (preferably in a mammal). The at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may alternatively encode an antigen. According to the present invention, the term 'antigen' refers to a substance which is recognized by the immune system and is capable of triggering an antigen-specific immune response, e.g. By formation of antibodies.
Antigens can be classified according to their origin. Accordingly, there are two major classes of antigens: exogenous and endogenous antigens. Exogenous antigens are antigens that enter the cell or the body from outside (the cell or the body), for example by inhalation, ingestion or injection, etc. These antigens are internalized by antigen-presenting cells ('APCs', such as dendritic cells or macrophages) and processed into fragments. APCs then present the fragments to T helper cells (e.g. CD4 +) by the use of MHC II molecules on their surface. Recognition of these antigen fragments by T cells leads to activation of the T cells and secretion of cytokines.
Cytokines are substances that can activate proliferation of immune cells such as cytotoxic T cells, B cells or macrophages. In contrast, endogenous antigens are antigens which have been generated within the cell, e.g. As a result of normal cell metabolism. Fragments of these antigens are presented on MHC I molecules on the surface of APCs. These antigens are recognized by activated antigen-specific cytotoxic CD8 + T cells.
After recognition, those T cells react in secretion of different toxins that cause lysis or apoptosis of the antigen-presenting cell. Endogenous antigens comprise antigens, e.g. Proteins or peptides encoded by a foreign nucleic acid inside the cell as well as proteins or peptides encoded by the genetic information of the cell itself, or antigens from intracellularly occurring viruses. One class of endogenous antigens is the class of tumor antigens. Those antigens are presented by the MHC I molecules on the surface of tumor cells. This class can be divided further in tumor-specific antigens (TSAs) and tumor-associated-antigens (TAAs).
TSAs can only be presented by tumor cells and never by normal 'healthy' cells. They typically result from a tumor specific mutation. TAAs, which are more common, are usually presented by both tumor and healthy cells. These antigens are recognized and the antigen-presenting cell can be destroyed by cytotoxic T cells. Additionally, tumor antigens can also occur on the surface of the tumor in the form of e.g. A mutated receptor.
In this case, they can be recognized by antibodies. Antigens, which may be encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, may include e.g.
Proteins, peptides or fragments thereof. Preferably, antigens are proteins and peptides or fragments thereof, such as epitopes of those proteins or peptides. Epitopes (also called 'antigen determinants'), typically, are fragments located on the outer surface of such antigenic protein or peptide structures having 5 to 15, preferably 9 to 15, amino acids (B-cell epitopes and T-cell epitopes are typically presented on MHC molecules, wherein e.g. MHC-I typically presents epitopes with a length of about 9 aa and MHC-II typically presents epitopes with a length of about 12-15 aa). Furthermore, antigens encoded by the at least one RNA (molecule) of the complex according to the invention may also comprise any other biomolecule, e.g., lipids, carbohydrates, etc., which may be covalently or non-covalently attached to the RNA (molecule). In accordance with the invention, antigens, which may be encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, may be exogenous or endogenous antigens. Endogenous antigens comprise antigens generated in the cell, especially in degenerate cells such as tumor cells.
These antigens are referred to as 'tumor antigens'. Preferably, without being restricted thereto, they are located on the surface of the cell. Furthermore, 'tumor antigens' means also antigens expressed in cells which are (were) not by themselves (or originally not by themselves) degenerate but are associated with the supposed tumor. Antigens which are connected with tumor-supplying vessels or (re)formation thereof, in particular those antigens which are associated with neovascularization, e.g. Growth factors, such as VEGF, bFGF etc., are also included herein. Antigens connected with a tumor furthermore include antigens from cells or tissues, typically embedding the tumor. Further, some substances (usually proteins or peptides) are expressed in patients suffering (knowingly or not-knowingly) from a cancer disease and they occur in increased concentrations in the body fluids of said patients, e.g.
Proteins, which are associated with tumor cell invasion and migration. These substances are also referred to as 'tumor antigens', however they are not antigens in the stringent meaning of an immune response inducing substance. Use thereof is also encompassed by the scope of the present invention. Antigens, which may be encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, may be exemplarily selected, without being restricted thereto, e.g. From any antigen suitable for the specific purpose, e.g. From antigens, which are relevant (or causal) for specific infection diseases, such as defined herein, from cancer antigens such as tumor specific surface antigens, from antigens expressed in cancer diseases, from mutant antigens expressed in cancer diseases, or from protein antigens involved in the etiology of further diseases, e.g. Autoimmune diseases, allergies, etc.
These antigens may be used to desensitize a patient by administering an antigen causing the patient's allergic or autoimmune status. Preferred exemplary antigenic (poly)peptides encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA as defined herein include all known antigenic peptides, for example tumour antigens, etc. Examples of tumor antigens which may be encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention are shown in Tables 1 and 2 below. These tables illustrate specific (protein) antigens (i.e. 'tumor antigens') with respect to the cancer disease, they are associated with. According to the invention, the terms 'cancer diseases' and 'tumor diseases' are used synonymously herein.
As a further alternative, the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may encode an antibody. According to the present invention, such an antibody may be selected from any antibody, e.g. Any recombinantly produced or naturally occurring antibodies, known in the art, in particular antibodies suitable for therapeutic, diagnostic or scientific purposes, or antibodies which have been identified in relation to specific cancer diseases. Herein, the term 'antibody' is used in its broadest sense and specifically covers monoclonal and polyclonal antibodies (including agonist, antagonist, and blocking or neutralizing antibodies) and antibody species with polyepitopic specificity.
According to the invention, 'antibody' typically comprises any antibody known in the art (e.g. IgM, IgD, IgG, IgA and IgE antibodies), such as naturally occurring antibodies, antibodies generated by immunization in a host organism, antibodies which were isolated and identified from naturally occurring antibodies or antibodies generated by immunization in a host organism and recombinantly produced by biomolecular methods known in the art, as well as chimeric antibodies, human antibodies, humanized antibodies, bispecific antibodies, intrabodies, i.e. Antibodies expressed in cells and optionally localized in specific cell compartments, and fragments and variants of the aforementioned antibodies. In general, an antibody consists of a light chain and a heavy chain both having variable and constant domains. The light chain consists of an N-terminal variable domain, V L, and a C-terminal constant domain, C L. In contrast, the heavy chain of the IgG antibody, for example, is comprised of an N-terminal variable domain, V H, and three constant domains, C H1, C H2 und C H3. Single chain antibodies may be encoded by the at least one RNA (molecule) of the complexed RNA as defined herein as well, preferably by a single-stranded RNA, more preferably by an mRNA.
According to a first alternative, the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may encode a polyclonal antibody. In this context, the term, 'polyclonal antibody' typically means mixtures of antibodies directed to specific antigens or immunogens or epitopes of a protein which were generated by immunization of a host organism, such as a mammal, e.g. Including goat, cattle, swine, dog, cat, donkey, monkey, ape, a rodent such as a mouse, hamster and rabbit.
Polyclonal antibodies are generally not identical, and thus usually recognize different epitopes or regions from the same antigen. Thus, in such a case, typically a mixture (a composition) of different RNA molecules complexed as claimed by the present invention will be applied, each encoding a specific (monoclonal) antibody being directed to specific antigens or immunogens or epitopes of a protein. According to a further alternative, the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may encode a monoclonal antibody. The term 'monoclonal antibody' herein typically refers to an antibody obtained from a population of substantially homogeneous antibodies, i.e., the individual antibodies comprising the population are identical except for possible naturally-occurring mutations that may be present in minor amounts.
Monoclonal antibodies are highly specific, being directed to a single antigenic site. Furthermore, in contrast to conventional (polyclonal) antibody preparations which typically include different antibodies directed to different determinants (epitopes), each monoclonal antibody is directed to a single determinant on the antigen. For example, monoclonal antibodies as defined above may be made by the hybridoma method first described by Kohler and Milstein, Nature, 256:495 (1975), or may be made by recombinant DNA methods, e.g. As described in. 'Monoclonal antibodies' may also be isolated from phage libraries generated using the techniques described in McCafferty et al., Nature, 348:552-554 (1990), for example. According to Kohler and Milstein, an immunogen (antigen) of interest is injected into a host such as a mouse and B-cell lymphocytes produced in response to the immunogen are harvested after a period of time.
The B-cells are combined with myeloma cells obtained from mouse and introduced into a medium which permits the B-cells to fuse with the myeloma cells, producing hybridomas. These fused cells (hybridomas) are then placed in separate wells in microtiter plates and grown to produce monoclonal antibodies. The monoclonal antibodies are tested to determine which of them are suitable for detecting the antigen of interest.
After being selected, the monoclonal antibodies can be grown in cell cultures or by injecting the hybridomas into mice. However, for the purposes of the present invention, the peptide sequences of these monoclonal antibodies have to be sequenced and RNA sequences encoding these antibodies may be prepared according to procedures well known in the art.
For therapeutical purposes in humans, non-human monoclonal or polyclonal antibodies, such as murine antibodies may also be encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention. However, such antibodies are typically only of limited use, since they generally induce an immune response by production of human antibodies directed to the said non-human antibodies, in the human body. Therefore, a particular non-human antibody can only be administered once to the human. To solve this problem, chimeric, humanized non-human and human antibodies can be encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention.
'Chimeric' antibodies, which may be encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, are preferably antibodies in which the constant domains of an antibody described above are replaced by sequences of antibodies from other organisms, preferably human sequences. 'Humanized' (non-human) antibodies, which may be also encoded by the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, are antibodies in which the constant and variable domains (except for the hypervariable domains) described above of an antibody are replaced by human sequences. According to another alternative, the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may encode human antibodies, i.e. Antibodies having only human sequences. Such human antibodies can be isolated from human tissues or from immunized non-human host organisms which are transgene for the human IgG gene locus, sequenced RNA sequences may be prepared according to procedures well known in the art. Additionally, human antibodies can be provided by the use of a phage display. In addition, the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may encode bispecific antibodies.
'Bispecific' antibodies in context of the invention are preferably antibodies which act as an adaptor between an effector and a respective target, e.g. For the purposes of recruiting effector molecules such as toxins, drugs, cytokines etc., targeting effector cells such as CTL, NK cells, makrophages, granulocytes, etc. (see for review: Kontermann R.E., Acta Pharmacol.). Bispecific antibodies as described herein are, in general, configured to recognize, e.g. Two different antigens, immunogens, epitopes, drugs, cells (or receptors on cells), or other molecules (or structures) as described above. Bispecificity means herewith that the antigen-binding regions of the antibodies are specific for two different epitopes. Thus, different antigens, immunogens or epitopes, etc.
Can be brought close together, what, optionally, allows a direct interaction of the two components. For example, different cells such as effector cells and target cells can be connected via a bispecific antibody.
Encompassed, but not limited, by the present invention are antibodies or fragments thereof which bind, on the one hand, a soluble antigen as described herein, and, on the other hand, an antigen or receptor on the surface of a tumor cell. The at least one RNA (molecule) of the complexed RNA of the present invention may also encode antibody fragments selected from Fab, Fab', F(ab') 2, Fc, Facb, pFc', Fd and Fv fragments of the aforementioned antibodies.
In general, antibody fragments are known in the art. For example, a Fab ('fragment, antigen binding') fragment is composed of one constant and one variable domain of each of the heavy and the light chain. The two variable domains bind the epitope on specific antigens. The two chains are connected via a disulfide linkage. A scFv ('single chain variable fragment') fragment, for example, typically consists of the variable domains of the light and heavy chains. The domains are linked by an artificial linkage, in general a polypeptide linkage such as a peptide composed of 15-25 glycine, proline and/or serine residues.
In order to determine the percentage to which two RNA sequences (nucleic or amino acid) are identical, the sequences can be aligned in order to be subsequently compared to one another. Therefore, e.g. Gaps can be inserted into the sequence of the first sequence and the component at the corresponding position of the second sequence can be compared. If a position in the first sequence is occupied by the same component as is the case at a position in the second sequence, the two sequences are identical at this position.
The percentage to which two sequences are identical is a function of the number of identical positions divided by the total number of positions. The percentage to which two sequences are identical can be determined using a mathematical algorithm. A preferred, but not limiting, example of a mathematical algorithm which can be used is the algorithm of Karlin et al. (1993), PNAS USA, 90:5873-5877 or Altschul et al.
(1997), Nucleic Acids Res, 25:3389-3402. Such an algorithm is integrated in the BLAST program. Sequences which are identical to the sequences of the RNA of the complexed RNA of the present invention to a certain extent can be identified by this program. Those at least one RNA molecules (of the immunostimulatory complexed single-stranded RNA of the present invention) encoding amino acid sequences which have (a) conservative substitution(s) compared to the physiological sequence in particular fall under the term variants. Substitutions in which encoded amino acids which originate from the same class are exchanged for one another are called conservative substitutions. In particular, these are encoded amino acids encoded aliphatic side chains, positively or negatively charged side chains, aromatic groups in the side chains or encoded amino acids, the side chains of which can enter into hydrogen bridges, e.g.
Side chains which have a hydroxyl function. This means that e.g.
An amino acid having a polar side chain is replaced by another amino acid having a likewise polar side chain, or, for example, an amino acid characterized by a hydrophobic side chain is substituted by another amino acid having a likewise hydrophobic side chain (e.g. Serine (threonine) by threonine (serine) or leucine (isoleucine) by isoleucine (leucine)). Insertions and substitutions are possible, in particular, at those sequence positions which cause no modification to the three-dimensional structure or do not affect the binding region. Modifications to a three-dimensional structure by insertion(s) or deletion(s) can easily be determined e.g. Using CD spectra (circular dichroism spectra) ( Urry, 1985, Absorption, Circular Dichroism and ORD of Polypeptides, in: Modern Physical Methods in Biochemistry, Neuberger et al. (ed.), Elsevier, Amsterdam). Immunostimulatory RNA•.
The at least one RNA (molecule) of the complexed RNA of the present invention may be an immunostimulatory RNA. Thereby, the immunostimulatory RNA may exhibit an immunostimulatory effect already prior to complexation of the RNA with the inventive oligopeptide according to formula (I) as defined above, or, more preferably, an immunostimulatory effect of the RNA as used herein can be enhanced or even induced by complexation of the RNA with the inventive oligopeptide according to formula (I) as defined above. The immunostimulatory RNA of the immunostimulatory complexed single-stranded RNA of the present invention may be any RNA, e.g. A coding RNA, as defined above. The immunostimulatory RNA is single-stranded, preferably a circular or linear RNA, more preferably a linear RNA. More preferably, the immunostimulatory RNA may be a linear single-stranded RNA.
Even more preferably, the immunostimulatory RNA may be a linear single-stranded messenger RNA (mRNA). An immunostimulatory RNA may also occur as a short RNA oligonucleotide as defined above. An immunostimulatory RNA as used herein may furthermore be selected from any class of RNA molecules, found in nature or being prepared synthetically, and which can induce an immune response.
In this context, an immune response may occur in various ways. A substantial factor for a suitable immune response is the stimulation of different T-cell sub-populations.
T-lymphocytes are typically divided into two sub-populations, the T-helper 1 (Th1) cells and the T-helper 2 (Th2) cells, with which the immune system is capable of destroying intracellular (Th1) and extracellular (Th2) pathogens (e.g. The two Th cell populations differ in the pattern of the effector proteins (cytokines) produced by them.
Thus, Th1 cells assist the cellular immune response by activation of macrophages and cytotoxic T-cells. Th2 cells, on the other hand, promote the humoral immune response by stimulation of the B-cells for conversion into plasma cells and by formation of antibodies (e.g. Against antigens). The Th1/Th2 ratio is therefore of great importance in the immune response. In connection with the present invention, the Th1lTh2 ratio of the immune response is preferably shifted in the direction towards the cellular response (Th1 response) and a cellular immune response is thereby induced. According to one example, the immune system may be activated by ligands of Toll-like receptors (TLRs).
TLRs are a family of highly conserved pattern recognition receptor (PRR) polypeptides that recognize pathogen-associated molecular patterns (PAMPs) and play a critical role in innate immunity in mammals. Currently at least thirteen family members, designated TLR1 - TLR13 (Toll-like receptors: TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TLR10, TLR11, TLR12 or TLR13), have been identified. Furthermore, a number of specific TLR ligands have been identified.
Found that unmethylated bacterial DNA and synthetic analogs thereof (CpG DNA) are ligands for TLR9 ( Hemmi H et al. (2000) Nature 408:740-5; Bauer S et al. (2001) Proc NatlAcadSci USA 98, 9237-42).
Furthermore, it has been reported that ligands for certain TLRs include certain nucleic acid molecules and that certain types of RNA are immunostimulatory in a sequence- independent or sequence-dependent manner, wherein these various immunostimulatory RNAs may e.g. Stimulate TLR3, TLR7, or TLR8, or intracellular receptors such as RIG-1, MDA-5, etc. Lipford et al. Determined certain G, U-containing oligoribonucleotides as immunostimulatory by acting via TLR7 and TLR8 (see WO 03/086280).
The immunostimulatory G, U-containing oligoribonucleotides described by Lipford et al. Were believed to be derivable from RNA sources including ribosomal RNA, transfer RNA, messenger RNA, and viral RNA.
According to the present invention, it was found that any RNA (molecule) as e.g. Defined above (irrespective of its specific length, strandedness, modification and/or nucleotide sequence) complexed with a carrier peptide according to empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x (formula I) may have immunostimulatory properties, i.e. Enhance the immune response. RNA as defined above complexed with a carrier peptide according to empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x (formula I) may thus be used to enhance (unspecific) immunostimulation, if suitable and desired for a specific treatment. Accordingly, it can be an intrinsic property of the complexed RNA of the invention to provide immunestimulatory effects by complexation of any RNA with a peptide according to formula (I). The at least one immunostimulatory RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may thus comprise any RNA sequence known to be immunostimulatory, including, without being limited thereto, RNA sequences representing and/or encoding ligands of TLRs, preferably selected from family members TLR1 - TLR13, more preferably from TLR7 and TLR8, ligands for intracellular receptors for RNA (such as RIG-I or MAD-5, etc.) (see, e.g.
Meylan, E., Tschopp, J. Toll-like receptors and RNA helicases: two parallel ways to trigger antiviral responses. Cell 22, 561-569), or any other immunostimulatory RNA sequence. Furthermore, (classes of) RNA molecules, which may be used as immunostimulatory RNA may include any other RNA capable of eliciting an immune response. Without being limited thereto, such immunostimulatory RNA may include ribosomal RNA (rRNA), transfer RNA (tRNA), messenger RNA (mRNA), and viral RNA (vRNA).
Such further (classes of) RNA molecules, which may be used as the at least one (immunostimulatory) RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, may comprise, without being limited thereto, e.g. In addition, such further (classes of) RNA molecules, which may be used as the at least one (immunostimulatory) RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may comprise, without being limited thereto, e.g. The at least one immunostimulatory RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may be furthermore modified, preferably 'chemically modified' in order to enhance the immunostimulatory properties of said DNA. The term 'chemical modification' means that the RNA used as immuostimulatory RNA according to the invention is modified by replacement, insertion or removal of individual or several atoms or atomic groups compared with naturally occurring RNA species. Preferably, the chemical modification of the RNA comprises at least one analogue of naturally occurring nucleotides. In a list which is in no way conclusive, examples which may be mentioned for nucleotide analogues which can be used according to the invention are analogues of guanosine, uracil, adenosine, thymidine, cytosine. The modifications may refer to modifications of the base, the ribose moiety and/or the phosphate backbone moiety.
The at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may be in the form of siRNA. A siRNA is of interest particularly in connection with the phenomenon of RNA interference. Attention was drawn to the phenomenon of RNA interference in the course of immunological research. In recent years, a RNA-based defence mechanism has been discovered, which occurs both in the kingdom of the fungi and in the plant and animal kingdom and acts as an 'immune system of the genome'. The system was originally described in various species independently of one another, first in C. Elegans, before it was possible to identify the underlying mechanisms of the processes as being identical: RNA-mediated virus resistance in plants, PTGS (posttranscriptional gene silencing) in plants, and RNA interference in eukaryotes are accordingly based on a common procedure. The in vitro technique of RNA interference (RNAi) is based on double-stranded RNA molecules (dsRNA), which trigger the sequence-specific suppression of gene expression ( Zamore (2001) Nat.
9: 746-750; Sharp (2001) Genes Dev. 5:485-490: Hannon (2002) Nature 41: 244-251). In the transfection of mammalian cells with long dsRNA, the activation of protein kinase R and RnaseL brings about unspecific effects, such as, for example, an interferon response ( Stark et al. 67: 227-264; He and Katze (2002) Viral Immunol.
These unspecific effects are avoided when shorter, for example 21- to 23-mer, so-called siRNA (small interfering RNA), is used, because unspecific effects are not triggered by siRNA that is shorter than 30 bp ( Elbashir et al. (2001) Nature 411: 494-498). Recently, dsRNA molecules have also been used in vivo ( McCaffrey et al. (2002), Nature 418: 38-39; Xia et al. (2002), Nature Biotech. 20: 1006-1010; Brummelkamp et al.
(2002), Cancer Cell 2: 243-247). An siRNA as used for the immunostimulatory complexed single-stranded RNA according to the present invention typically comprises a single-stranded RNA sequence with about 8 to 30 nucleotides, preferably 17 to 25 nucleotides, even more preferably from 20 to 25 and most preferably from 21 to 23 nucleotides.
In principle, all the sections having a length of from 17 to 29, preferably from 19 to 25, most preferably from 21 to 23 base pairs that occur in the coding region of a RNA sequence as mentioned above, e.g. Of an (m)RNA sequence, can serve as target sequence for a siRNA. Equally, siRNAs can also be directed against nucleotide sequences of a (therapeutically relevant) protein or antigen described hereinbefore that do not lie in the coding region, in particular in the 5' non-coding region of the RNA, for example, therefore, against non-coding regions of the RNA having a regulatory function. The target sequence of the siRNA can therefore lie in the translated and/or untranslated region of the RNA and/or in the region of the control elements. The target sequence of a siRNA can also lie in the overlapping region of untranslated and translated sequence; in particular, the target sequence can comprise at least one nucleotide upstream of the start triplet of the coding region of the RNA. Antisense RNA•. The at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may be an antisense RNA.
In the context of the present invention, an antisense RNA is preferably a (single-stranded) RNA molecule transcribed on the basis of the coding, rather than the template, strand of DNA, so that it is complementary to the sense (messenger) RNA. An antisense RNA as used herein as the at least one RNA (molecule) of the complexed RNA of the present invention typically forms a duplex between the sense and antisense RNA molecules and is thus capable to block translation of the mRNA. An antisense RNA as used herein as the at least one RNA (molecule) of the complexed RNA of the present invention can be directed against (may be complementary to) any portion of the mRNA sequence, which may encode a (therapeutically relevant) protein or antigen (e.g.
As described hereinbefore), if thereby translation of the encoded protein is reduced/suppressed. Accordingly, the target sequence of the antisense RNA on the targeted mRNA may be located in the translated and/or untranslated region of the mRNA, e.g. In the region of the mRNA control elements, in particular in the 5' non-coding region of the RNA exerting a regulatory function. The target sequence of an antisense RNA on the targeted mRNA may also be constructed such that the antisense RNA binds to the mRNA by covering with its sequence a region which is partially complementary to the untranslated and to translated (coding) sequence of the targeted mRNA; in particular, the antisense RNA may be complementary to the target mRNA sequence by at least one nucleotide upstream of the start triplet of the coding region of the targeted mRNA. Preferably, the antisense RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention comprises a length as generally defined above for RNA molecules (of the complexed RNA of the present invention). Typically the antisense RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention will be a fragment of the targeted mRNA.
In more detail, the antisense RNA may have more preferably a length of of 5 to 5000, of 500 to 5000, and, more preferably, of 1000 to 5000 or, alternatively, of 5 to 1000, 5 to 500, 5 to 250, of 5 to 100, of 5 to 50 or of 5 to 30 nucleotides, or, alternatively, and even more preferably a length of 20 to 100, of 20 to 80, or of 20 to 60 nucleotides. Modifications of the RNA•. According to one embodiment, the RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention (irrespective of its e.g. Specific therapeutic potential, length, and/or sequence), particularly the short RNA oligonucleotide, the coding RNA, the immunostimulatory RNA, the siRNA, the antisense RNA, the riboswitches, ribozymes or aptamers, may provided as a modified RNA, wherein any modification, in particular a modification disclosed in the following) may be introduced (in any combination or as such) into the RNA (molecules) as defined above. Certain types of modifications may, however, be more suitable for specific RNA types (e.g.
More suitable for coding RNA), while other modifications may be applied for any RNA molecule, e.g. As defined herein without being restricted to specific RNA types. Accordingly, modifications of the RNA may be introduced in order to achieve specific or complex effects which may desired for the use of the subject-matter of the invention. Accordingly, modifications may be designed to e.g. Stabilize the RNA against degradation, to enhance their transfection efficacy, to improve its translation efficacy, to increase their immunogenic potential and/or to enhance their therapeutic potential (e.g. Enhance their silencing or antisense properties).
It is particularly preferred, if the modified RNA as component of the inventive complexed RNA allows to combine improvement of at least one, more preferably of at least two functional properties, e.g. To stabilized the RNA and to improve the therapeutic or immunogenic potential. Generally, it is a primary object to stabilize the RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, which allows to extend their half-life time in vivo. Preferably, the half-life time of a modified RNA under in vivo conditions is extended (as compared to the unmodified RNA) by at least 20, more preferably at least 40, more preferably at least 50 and even more preferably at least 70, 80, 90, 100, 150 or 200%. The stabilization achieved by the modification may extend the half-life time of the modified mRNA by at least 5, 10, 15, 30 or more preferably at least 60 min as compared to the unmodified RNA. According to one embodiment, the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, preferably a coding RNA, e.g.
MRNA, may be stabilized by modifying the G/C content of e.g. The coding region of the RNA. In a particularly preferred embodiment of the present invention, the G/C content of the coding region of the RNA (of the immunostimulatory complexed single-stranded RNA of the present invention) is altered, particularly increased, compared to the G/C content of the coding region of its corresponding wild-type RNA, i.e.
The unmodified RNA. The encoded amino acid sequence of the modified RNA is preferably not altered as compared to the amino acid sequence encoded by the corresponding wild-type RNA. This modification of the RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention is based on the fact that the coding sequence of any RNA to be translated is important for efficient translation of that RNA.
In particular, sequences having an increased G (guanosine)/C (cytosine) content are more stable than sequences having an increased A (adenosine)/U (uracil) content. According to the invention, the codons of the RNA are therefore altered compared to the wild-type RNA, while retaining the translated amino acid sequence, such that they include an increased amount of G/C nucleotides. In respect to the fact that several codons code for one and the same amino acid (so-called degeneration of the genetic code), the most favorable codons for the stability can be determined (so-called alternative codon usage). Depending on the amino acid to be encoded by the RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, there are various possibilities for modification of the RNA sequence, compared to its wild-type sequence. In the case of amino acids which are encoded by codons which contain exclusively G or C nucleotides, no modification of the codon is necessary.
Thus, the codons for Pro (CCC or CCG), Arg (CGC or CGG), Ala (GCC or GCG) and Gly (GGC or GGG) require no modification, since no A or U is present. In other cases, although A or U nucleotides cannot be eliminated from the codons, it is however possible to decrease the A and U content by using codons which contain a lower content of A and/or U nucleotides. The substitutions listed above can be used either individually or in all possible combinations to increase the G/C content of the RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention compared to its particular wild-type RNA (i.e. The original sequence). Thus, for example, all codons for Thr occurring in the wild-type sequence can be modified to ACC (or ACG). Preferably, the G/C content of the coding region of the RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention is increased by at least 7%, more preferably by at least 15%, particularly preferably by at least 20%, compared to the G/C content of the coded region of the wild-type RNA which codes for a protein. According to a specific embodiment at least 60%, more preferably at least 70%, even more preferably at least 80% and most preferably at least 90%, 95% or even 100% of the substitutable codons in the region coding for a protein or the whole sequence of the wild type RNA sequence are substituted, thereby increasing or even maximizing the GC/content of said sequence.
According to the invention, a further preferred modification of the RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention is based on the finding that the translation efficiency is also determined by a different frequency in the occurrence of tRNAs in cells. Thus, if so-called 'rare codons' are present in an RNA sequence to an increased extent, the corresponding modified RNA sequence is translated to a significantly poorer degree than in the case where codons coding for relatively 'frequent' tRNAs are present. According to the invention, in the RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, the region which codes for the protein is modified compared to the corresponding region of the wild-type RNA such that at least one codon of the wild-type sequence which codes for a tRNA which is relatively rare in the cell is exchanged for a codon which codes for a tRNA which is relatively frequent in the cell and carries the same amino acid as the relatively rare tRNA.
By this modification, the RNA sequences are modified such that codons for which frequently occurring tRNAs are available are inserted. In other words, according to the invention, by this modification all codons of the wild-type sequence which code for a tRNA which is relatively rare in the cell can in each case be exchanged for a codon which codes for a tRNA which is relatively frequent in the cell and which, in each case, carries the same amino acid as the relatively rare tRNA. According to the invention, it is particularly preferable to link the sequential G/C content which is increased, in particular maximized, in the RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, with the 'frequent' codons without modifying the amino acid sequence of the protein encoded by the coding region of the RNA. This preferred embodiment allows provision of a particularly efficiently translated and stabilized (modified) RNA of the immunostimulatory complexed single-stranded RNA according to the present invention. The determination of the G/C content of an RNA as used herein as the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention (increased G/C content; exchange of tRNAs) can be carried out using the computer program explained in WO 02/098443 - the disclosure content of which is included in its full scope in the present invention.
Using this computer program, the nucleotide sequence of any desired RNA can be modified with the aid of the genetic code or the degenerative nature thereof such that a maximum G/C content results, in combination with the use of codons which code for tRNAs occurring as frequently as possible in the cell, the amino acid sequence coded by the RNA (molecule) preferably not being modified compared to the non-modified sequence. Alternatively, it is also possible to modify only the G/C content or only the codon usage compared to the original sequence. The source code in Visual Basic 6.0 (development environment used: Microsoft Visual Studio Enterprise 6.0 with Servicepack 3) is also described in WO 02/098443.
In a further preferred embodiment of the present invention, the A/U content in the environment of the ribosome binding site of the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention is increased compared to the A/U content in the environment of the ribosome binding site of its particular wild-type RNA. This modification (an increased A/U content around the ribosome binding site) increases the efficiency of ribosome binding to the modified RNA.
An effective binding of the ribosomes to the ribosome binding site (Kozak sequence: GCCGCCACCAUGG (SEQ ID NO: 33), the AUG forms the start codon) in turn has the effect of an efficient translation of the modified RNA. According to a further embodiment of the present invention the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may be modified with respect to potentially destabilizing sequence elements. Particularly, the coding region and/or the 5' and/or 3' untranslated region of this RNA may be modified compared to the particular wild-type RNA such that is contains no destabilizing sequence elements, the coded amino acid sequence of the RNA (molecule) preferably not being modified compared to its particular wild-type RNA. It is known that, for example, in sequences of eukaryotic RNAs destabilizing sequence elements (DSE) occur, to which signal proteins bind and regulate enzymatic degradation of RNA in vivo.
For further stabilization of the RNA (molecule), optionally in the region which encodes for a protein, one or more such modifications compared to the corresponding region of the wild-type RNA can therefore be carried out, so that no or substantially no destabilizing sequence elements are contained there. According to the invention, DSE present in the untranslated regions (3'-and/or 5'-UTR) can also be eliminated from the at least one RNA (molecule) of the complexed RNA of the present invention by such modifications.
Such destabilizing sequences are e.g. AU-rich sequences (AURES), which occur in 3'-UTR sections of numerous unstable RNAs ( Caput et al., Proc. USA 1986, 83: 1670 to 1674). The RNA of the complexed RNA according to the present invention is therefore preferably modified compared to the wild-type RNA such that the RNA contains no such destabilizing sequences. This also applies to those sequence motifs which are recognized by possible endonucleases, e.g. The sequence GAACAAG, which is contained in the 3'-UTR segment of the gene which codes for the transferrin receptor ( Binder et al., EMBO J. 1994, 13: 1969 to 1980).
These sequence motifs are also preferably removed according to the invention in the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention. Another modification enhancing the stability of the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention is based on 5'-or 3' elongations of the RNA, typically homonucleotide elongations of a length of 10 to 200 nucleotides. These elongations may contain, particularly if the RNA is provided as mRNA, a poly-A tail at the 3' terminus of typically about 10 to 200 adenosine nucleotides, preferably about 10 to 100 adenosine nucleotides, more preferably about 20 to 70 adenosine nucleotides or even more preferably about 20 to 60 adenosine nucleotides. Alternatively or additionally, the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may contain, particularly if the RNA is provided as mRNA, a poly-C tail at the 3' terminus of typically about 10 to 200 cytosine nucleotides, preferably about 10 to 100 cytosine nucleotides, more preferably about 20 to 70 cytosine nucleotides or even more preferably about 20 to 60 or even 10 to 40 cytosine nucleotides. Another modification, which may occur in the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, particularly if the RNA is provided as mRNA, refers preferably to at least one IRES and/or at least one 5' and/or 3' stabilizing sequence. According to the invention, one or more so-called IRES (internal ribosomal entry site) may be inserted into the RNA. An IRES can thus function as the sole ribosome binding site, but it can also serve to provide a RNA which codes several proteins which are to be translated by the ribosomes independently of one another (multicistronic RNA).
Examples of IRES sequences which can be used according to the invention are those from picornaviruses (e.g. FMDV), pestiviruses (CFFV), polioviruses (PV), encephalomyocarditis viruses (ECMV), foot and mouth disease viruses (FMDV), hepatitis C viruses (HCV), classical swine fever viruses (CSFV), mouse leukoma virus (MLV), simian immunodeficiency viruses (SIV) or cricket paralysis viruses (CrPV).
According to the invention, the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may exhibit at least one 5' and/or 3' stabilizing sequence as known from the art. These stabilizing sequences in the 5' and/or 3' untranslated regions have the effect of increasing the half-life of the RNA in the cytosol. These stabilizing sequences can have 100% sequence homology to naturally occurring sequences which occur in viruses, bacteria and eukaryotes, but can also be partly or completely synthetic. The untranslated sequences (UTR) of the globin gene, e.g. From Homo sapiens or Xenopus laevis may be mentioned as an example of stabilizing sequences which can be used in the present invention for a stabilized RNA. Another example of a stabilizing sequence has the general formula (C/U)CCAN xCCC(U/A)Py xUC(C/U)CC (SEQ ID NO: 34), which is contained in the 3'UTR of the very stable RNA which codes for globin, (I)-collagen, 15-lipoxygenase or for tyrosine hydroxylase (cf.
Holcik et al., Proc. USA 1997, 94: 2410 to 2414). Such stabilizing sequences can of course be used individually or in combination with one another and also in combination with other stabilizing sequences known to a person skilled in the art. The at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention is therefore preferably present as globin UTR (untranslated regions)-stabilized RNA, in particular as globin UTR-stabilized RNA. If desired, the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may contain backbone modifications. A backbone modification in connection with the present invention is a modification in which phosphates of the backbone of the nucleotides contained in the RNA are chemically modified.
Such backbone modifications typically include, without implying any limitation, modifications from the group consisting of methylphosphonates, phosphoramidates and phosphorothioates (e.g. The at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may additionally or alternatively also contain sugar modifications. The at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may additionally or alternatively also contain at least one base modification, which is preferably suitable for increasing the expression of the protein coded for by the at least one RNA (molecule) significantly as compared with the unaltered, i.e. Natural (= native), RNA sequence.
Significant in this case means an increase in the expression of the protein compared with the expression of the native RNA sequence by at least 20%, preferably at least 30%, 40%, 50% or 60%, more preferably by at least 70%, 80%, 90% or even 100% and most preferably by at least 150%, 200% or even 300%. The at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may additionally or alternatively also contain at least one modification of a nucleoside of a nucleotide as contained in the at least one RNA (molecule), which acts immunosuppressive, i.e. Is preferably suitable for preventing or decreasing an immune response, when administered to a patient in need thereof.
Such at least one modification is preferably selected from nucleoside modifications selected from: • a) a chemical modification at the 4-, 5-or 6-position of the pyrimidine base of the nucleosides of cytidine and/or uridine; • b) a chemical modification at the 2-, 6-, 7- or 8-position of the purine base of the nucleosides of adenosine, inosine and/or guanosine; and/or • c) a chemical modification at the 2'-position of the sugar of the nucleosides of adenosine, inosine, guanosine, cytidine and/or uridine. In this context, an (m)RNA is a nucleic acid chain formed by a number of nucleotides typically selected from adenosine-5'-monophosphate, guanosine-5'-monophosphate, inosine-5'-monophosphate, cytidine-5'-monophosphate and/or uridine-5'-monophosphate.
Those nucleotides are linked to each other via their monophosphate. Nucleotides comprise nucleosides and a 5'-monophosphate as a structural component, wherein the nucleosides are typically formed by a nucleobase, i.e.
A pyrimidine (uracil or cytosine) or a purine (adenine or guanine) base, and a sugar. Accordingly, a modification of a nucleoside of at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention is always intended to mean a modification in the nucleoside structure of the respective nucleotide of said at least one RNA (molecule). According to a first modification a), at least one nucleoside of the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, may be modified with a chemical modification at the 5- or 6-position of the pyrimidine base of the nucleosides cytidine and/or uridine.
According to second modification b), at least one nucleoside of the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, suitable for suppressing and/or avoiding an (innate) immunostimulatory response in a mammal typically exhibited when administering the corresponding unmodified at least one RNA (molecule), may be alternatively modified with a chemical modification at the 2-, 6-, 7- or 8-position of the purine base of the nucleosides adenosine, inosine and/or guanosine. Without being limited thereto, such chemical modifications at the 2-, 6-, 7- or 8-position of the purine base of the nucleosides adenosine, inosine and/or guanosine may be selected from the group consisting of 2-Amino-, 7-Deaza-, 8-Aza-, or 8-Azido.
According to a third modification c), at least one nucleoside of the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention, suitable for suppressing and/or avoiding an (innate) immunostimulatory response in a mammal typically exhibited when administering the corresponding unmodified at least one RNA (molecule), may be modified with at least one chemical modification at the 2'-position of the sugar of the nucleosides adenosine, inosine, guanosine, cytidine and/or uridine, when incorporated in the RNA sequence. Without being limited thereto, such chemical modifications at the 2'-position of the sugar of the nucleosides adenosine, inosine, guanosine, cytidine and/or uridine may be selected from the group consisting of: 2'-deoxy-, 2'-amino-2'-deoxy-, 2'-amino-, 2'-fluoro-2'-deoxy-, 2'-fluoro-, 2'-O-methyl-2'-deoxy- or 2'-O-methyl. If desired, the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the present invention may contain substitutions, additions or deletions of nucleotides, which are preferably introduced to achieve functional effects.
These various types of nucleotide modifications may be introduced, if the RNA, e.g the mRNA, is derived from a WT sequence. Hereby, a DNA matrix is used for preparation of the RNA of the complexed RNA according to the present invention by techniques of the well known site directed mutagenesis (see e.g. Maniatis et al., Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, 3rd ed., Cold Spring Harbor, NY, 2001). In such a process, for preparation of the RNA, a corresponding DNA molecule may be transcribed in vitro. This DNA matrix has a suitable promoter, e.g. A T7 or SP6 promoter, for in vitro transcription, which is followed by the desired nucleotide sequence for the RNA to be prepared and a termination signal for in vitro transcription.
According to the invention, the DNA molecule which forms the matrix of a RNA of interest may be prepared by fermentative proliferation and subsequent isolation as part of a plasmid which can be replicated in bacteria. Plasmids which may be mentioned as suitable for the present invention are e.g.
The plasmids pT7Ts (GenBank accession number U26404; Lai et al., Development 1995, 121: 2349 to 2360), pGEM® series, e.g. PGEM®-1 (GenBank accession number X65300; from Promega) and pSP64 (GenBank accession number X65327); cf.
Also Mezei and Storts, Purification of PCR Products, in: Griffin and Griffin (ed.), PCR Technology: Current Innovation, CRC Press, Boca Raton, FL, 2001. The mass or molar ratio of the components of the RNA complex according to the present invention, which means the mass or molar ratio of the RNA (be it single- or double-stranded) to the one or more oligopeptides typically is by no way restricted and is chosen as suitable for the particular application. However, the mass or molar ratio of the one or more oligopeptides and the RNA may be less than 1:1, 1:2, 1:3, 1:4, 1:5, 1:6, 1:7, 1:8, 1:9, 1:10, 1:11, 1:12, 1:13, 1:14, 1:15, 1:16, 1:17, 1:18, or less than 1:20. Alternatively, the mass or molar ratio of the one or more oligopeptides and the RNA may higher than 1:1, 2:1, 3:1, 4:1, 5:1, 6:1, 7:1, 8:1, 9:1, 10:1, 11:1, 12:1, 13:1, 14:1, 15:1, 16:1, 17:1, 18:1, 19:1, 20:1. Preferably, the mass or molar ratio of the one or more oligopeptides and the RNA may not be less than 1:5 with respect to the content of the one or more oligopeptides.
More preferably, the (molar or) mass ratio of the one or more oligopeptides and the RNA is from 1:5 to 20:1, more preferably from 1:3 to 15:1. In the context of the present invention, the molar ratio and the mass ratio are typically dependent on each other, wherein each of these ratios may be influenced by factors such as RNA length or peptide length. However, for purposes of determination, the mass ratio and the molar ratio may be calculated for an average complex size, wherein a mass ratio of about 1:50 - 1:1 approximately corresponds to a molar ratio of about 1:10000 - 1:1000.
An exemplary schedule of molar and mass ratios is given in the Examples, which may be used for calculation additionally. Furthermore, the ratio of the RNA complex components according to the present invention, particularly the ratio of the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA to the one or more oligopeptides, is calculated on the basis of the nitrogen/phosphate ratio (N/P-ratio) of the entire RNA complex. In the context of the present invention, an N/P-ratio is in the range of about 0.5-50 and most preferably in a range of about 0.75-25 or 1-25 regarding the ratio of peptide:RNA in the complex, even more preferably in the range of about 10-50 and most preferably in the range of about 25-50). Another embodiment of the present invention relates to a composition, preferably a pharmaceutical composition, comprising an immunostimulatory complexed single-stranded RNA according to the present invention and optionally a (pharmaceutically) suitable carrier and/or further auxiliary substances and additives. The (pharmaceutical) composition employed according to the present invention typically comprises a safe and effective amount of a immunostimulatory complexed single-stranded RNA according to the present invention.
As used herein, a 'safe and effective amount' means an amount of a complexed RNA according to the present invention such as to provide an effect in cells or tissues in vitro or in vivo, e.g. To induce significantly an expression ( in vitro or in vivo) of an encoded protein as described above, such as a therapeutically active protein, an antibody or an antigene, or any other protein or peptide as described above, to induce a positive change of a state to be treated ( in vivo) in a cell, a tissue or an organism, e.g. A tumour disease or cancer disease, a cardiovascular disease, an infectious disease, an autoimmune disease, (mono-)genetic diseases, etc. As described herein, and/or to induce or enhance an immue response.
At the same time, however, a 'safe and effective amount' is low enough to avoid serious side effects, particularly in the therapy of diseases as mentioned herein, that is to say to render possible a reasonable ratio of advantage and risk. Determination of these limits typically lies within the range of reasonable medical judgement.
The concentration of the complexed RNA according to the invention in such (pharmaceutical) compositions can therefore vary, for example, without being limited thereto, within a wide range of from e.g. 0.1 ng to 1,000 mg/ml or even more. Such a 'safe and effective amount' of a complexed RNA according to the invention can vary in connection with the particular state to be treated and the age and the physical state of the patient to be treated, the severity of the state, the duration of the treatment, the nature of the concomitant therapy, of the particular (pharmaceutically) suitable carrier used and similar factors within the knowledge and experience of the treating doctor. The (pharmaceutical) composition described here can be employed for human and also for veterinary medicine purposes. The (pharmaceutical) composition according to the invention described here can optionally comprise a suitable carrier, preferably a pharmaceutically suitable carrier. The term 'suitable carrier' used here preferably includes one or more compatible solid or liquid fillers, or diluents or encapsulating compounds which are suitable for administration to a person. The term 'compatible' as used here means that the constituents of the composition are capable of being mixed together with the complexed RNA according to the invention and the auxiliary substance optionally contained in the composition, as such and with one another in a manner such that no interaction which would substantially reduce the (pharmaceutical) effectiveness of the composition under usual condition of use occurs, such as e.g.
Would reduce the (pharmaceutical) activity of the encoded proteins or even suppress or impair expression of the coded proteins or e.g. Would inhibit the immunogenic potential of the complexed RNA. Suitable carrier must of course have a sufficiently high purity and a sufficiently low toxicity to render them suitable for administration to a person to be treated. Carriers are chosen dependent on the way of administration, be it in solid or liquid form. Accordingly, the choice of a (pharmaceutically) suitable carrier as described above is determined in particular by the mode in which the (pharmaceutical) composition according to the invention is administered.
The (pharmaceutical) composition according to the invention can be administered, for example, systemically. Administration routes include e.g.
Intra- or transdermal, oral, parenteral, including subcutaneous, intramuscular, i.a. Or intravenous injections, topical and/or intranasal routes.
The suitable amount of the (pharmaceutical) composition according to the invention which is to be used can be determined by routine experiments using animal models. Such models include, but without being limited thereto, models of the rabbit, sheep, mouse, rat, dog and non-human primate models. Preferably, the (pharmaceutical) composition contains the inventive immunostimulatory complexed single-stranded RNA in water. Alternatively, the (pharmaceutical) composition according to the invention may contain an injection buffer as carrier for liquid preparation, which preferably improves transfection and, if the RNA of the immunostimulatory complexed single-stranded RNA of the present invention codes for a protein, also the translation of the encoded protein, in cells, tissues or an organism. The (pharmaceutical) composition according to the invention can comprise, for example, an aqueous injection buffer or water which contains, with respect to the total (pharmaceutical) composition, if this is in liquid form, a sodium salt, preferably at least 50 mM sodium salt, a calcium salt, preferably at least 0.01 mM calcium and/or magnesium salt, and optionally a potassium salt, preferably at least 3 mM potassium salt. According to a preferred embodiment, the sodium salts, calcium and/or magnesium salts and optionally potassium salts contained in such an injection buffer are in the form of halides, e.g. Chlorides, iodides or bromides, or in the form of their hydroxides, carbonates, bicarbonates or sulfates.
Examples which are to be mentioned here are, for the sodium salt NaCl, Nal, NaBr, Na 2CO 3, NaHCO 3, and/or Na 2SO 4, for the potassium salt optionally present KCI, Kl, KBr, K 2CO 3, KHCO 3, and/or K 2SO 4, and for the calcium and/or magnesium salt CaCl 2, Cal 2, CaBr 2, CaCO 3, CaSO 4, Ca(OH) 2, MgCl 2, Mgl 2, MgBr 2, MgCO 3, MgSO 4, and/or Mg(OH) 2. The injection buffer can also contain organic anions of the abovementioned cations. In a particularly preferred embodiment, such an injection buffer contains as salts sodium chloride (NaCl), calcium chloride (CaCl 2) and optionally potassium chloride (KCI), it also being possible for other anions to be present in addition to the chlorides. These salts are typically present in the injection buffer optionally used in the (pharmaceutical) composition according to the invention, with respect to the total (pharmaceutical) composition (if this is in liquid form), in a concentration of at least 50 mM sodium chloride (NaCl), at least 3 mM potassium chloride (KCI) and at least 0.01 mM calcium and/or magnesium chloride (CaCl 2). The injection buffer can be in the form of both hypertonic and isotonic or hypotonic injection buffers. In connection with the present invention, in this context the injection buffer is hypertonic, isotonic or hypotonic in each case with respect to the particular reference medium, i.e. The injection buffer has either a higher, the same or a lower salt content compared with the particular reference medium, such concentrations of the abovementioned salts which do not lead to damage to the cells caused by osmosis or other concentration effects preferably being employed.
Reference media here are, for example, liquids which occur in ' in vivd' methods, such as, for example, blood, lymph fluid, cytosol fluids or other fluids which occur in the body, or liquids or buffers conventionally employed in ' in vitro' methods. Such liquids and buffers are known to a person skilled in the art. The injection buffer optionally contained in the (pharmaceutical) composition according to the invention can also contain further components, for example sugars (mono-, di-, tri- or polysaccharides), in particular glucose or mannitol. In a preferred embodiment, however, no sugars are present in the injection buffer used. It is also preferable for the injection buffer precisely to contain no non-charged components, such as, for example, sugars.
The injection buffer typically contains exclusively metal cations, in particular from the group consisting of the alkali or alkaline earth metals, and anions, in particular the anions described above. The pH of the injection buffer used, with respect to the total (pharmaceutical) composition, if this is in liquid form, is preferably between 1 and 8.5, preferably between 3 and 5, more preferably between 5.5 and 7.5, in particular between 5.5 and 6.5. If appropriate, the injection buffer can also contain a buffer system which fixes the injection buffer at a buffered pH. This can be, for example, a phosphate buffer system, HEPES or Na 2HPO 4/NaH 2PO 4. However, the injection buffer used very particularly preferably contains none of the abovementioned buffer systems or contains no buffer system at all. The injection buffer optionally contained in the (pharmaceutical) composition according to the invention can contain, in addition to or as an alternative to the monovalent and divalent cations described, divalent cations, in particular from the group consisting of alkaline earth metals, such as, for example, magnesium (Mg 2+), or also iron (Fe 2+), and monovalent cations, in particular from the groups consisting of alkali metals, such as, for example, lithium (Li +). These monovalent cations are preferably in the form of their salts, e.g.
In the form of halides, e.g. Chlorides, iodides or bromides, or in the form of their hydroxides, carbonates, bicarbonates or sulfates. Examples which are to be mentioned here are, for the lithium salt LiCl, Lil, LiBr, Li 2CO 3, LiHCO 3, Li 2SO 4, for the magnesium salt MgCl 2, Mgl 2, MgBr 2, MgCO 3, MgSO 4, and Mg(OH) 2, and for the iron salt FeCl 2, FeBr 2, Fel 2, FeF 2, Fe 2O 3, FeCO 3, FeSO 4, Fe(OH) 2. All the combinations of di- and/or monovalent cations, as described above, are likewise included. Such injection buffers which contain only divalent, only monovalent or di- and monovalent cations can thus be used in the (pharmaceutical) composition according to the invention. Such injection buffers which contain only one type of di- or monovalent cations, particularly preferably e.g. Only Ca 2+ cations, or a salt thereof, e.g.
CaCl 2, can likewise be used. The molarities given above for Ca 2+ (as a divalent cation) and Na 1+ (as a monovalent cation) (that is to say typically concentrations of at least 50 mM Na +, at least 0.01 mM Ca 2+ and optionally at least 3 mM K +) in the injection buffer can also be taken into consideration if another di- or monovalent cation, in particular other cations from the group consisting of the alkaline earth metals and alkali metals, are employed instead of some or all the Ca 2+ or, respectively, Na 1+ in the injection buffer used according to the invention for the preparation of the injection solution. All the Ca 2+ or Na 1+, as mentioned above, can indeed be replaced by in each case other di- or, respectively, monovalent cations in the injection buffer used, for example also by a combination of other divalent cations (instead of Ca 2+) and/or a combination of other monovalent cations (instead of Na 1+) (in particular a combination of other divalent cations from the group consisting of the alkaline earth metals or, respectively, of other monovalent cations from the group consisting of the alkali metals), but it is preferable to replace at most some of the Ca 2+ or Na 1+, i.e. For at least 20%, preferably at least 40%, even more preferably at least 60% and still more preferably at least 80% of the particular total molarities of the mono- and divalent cations in the injection to be occupied by Ca 2+ and, respectively, Na 1+. However, it is very particularly preferable if the injection buffer optionally contained in the pharmaceutical composition according to the invention contains exclusively Ca 2+ as a divalent cation and Na 1+ as a monovalent cation, that is to say, with respect to the total pharmaceutical composition, Ca 2+ represents 100% of the total molarity of divalent cations, just as Na 1+ represents 100% of the total molarity of monovalent cations. The aqueous solution of the injection buffer can contain, with respect to the total pharmaceutical composition, up to 30 mol% of the salts contained in the solution, preferably up to 25 mol%, preferably up to 20 moi%, furthermore preferably up to 15 mol%, more preferably up to 10 mol%, even more preferably up to 5 mol%, likewise more preferably up to 2 mol% of insoluble or sparingly soluble salts.
Salts which are sparingly soluble in the context of the present invention are those of which the solubility product is 10 -4. Preferably, the injection buffer optionally contained in the pharmaceutical composition according to the invention is from 50 mM to 800 mM, preferably from 60 mM to 500 mM, more preferably from 70 mM to 250 mM, particularly preferably 60 mM to 110 mM in sodium chloride (NaCl), from 0.01 mM to 100 mM, preferably from 0.5 mM to 80 mM, more preferably from 1.5 mM to 40 mM in calcium chloride (CaCl 2) and optionally from 3 mM to 500 mM, preferably from 4 mM to 300 mM, more preferably from 5 mM to 200 mM in potassium chloride (KCI).
Organic anions can also occur as further anions in addition to the abovementioned inorganic anions, for example halides, sulfates or carbonates. Among these there may be mentioned succinate, lactobionate, lactate, malate, maleate etc., which can also be present in combination.
An injection buffer optionally contained in the (pharmaceutical) composition according to the invention preferably contains lactate. If it contains an organic anion, such an injection buffer particularly preferably contains exclusively lactate as the organic anion. Lactate in the context of the invention can be any desired lactate, for example L-lactate and D-lactate.
Lactate salts which occur in connection with the present invention are typically sodium lactate and/or calcium lactate, especially if the injection buffer contains only Na + as a monovalent cation and Ca 2+ as a divalent cation. An injection buffer optionally used in the (pharmaceutical) composition according to the invention and as described above preferably contains, with respect to the total pharmaceutical composition, from 15 mM to 500 mM, more preferably from 15 mM to 200 mM, and even more most preferably from 15 mM to 100 mM lactate. If formulated in non-liquid form (e.g. In solid or semi-solid form), the pharmaceutical composition of the invention may be contain compounds which can serve as suitable carriers or constituents thereof, e.g. Other suitable carriers for injection include hydrogels, devices for controlled or delayed release, polylactic acid and collagen matrices.
Suitable carriers which can be used here include those which are suitable for use in lotions, creams, gels and the like. If the compound is to be administered perorally, tablets, capsules and the like are the preferred unit dose form. The suitable carriers for the preparation of unit dose forms which can be used for oral administration are well-known in the prior art. Their choice will depend on secondary considerations, such as flavour, cost and storage stability, which are not critical for the purposes of the present invention and can be implemented without difficulties by a person skilled in the art. Disclosed herein is an ( in vitro or in vivo) transfection method for transfecting cells or a tissue with the immunostimulatory complexed single-stranded RNA of the present invention as described above. The ( in vitro or in vivo) transfection method preferably comprises the following steps: • a) Optionally preparing and/or providing an immunostimulatory complexed single-stranded RNA according to the present invention, comprising at least one RNA complexed with one or more oligopeptides having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x; • b) Transfecting a cell, a (living) tissue or an organism ( in vitro or in vivo) using the immunostimulatory complexed single-stranded RNA prepared and/or provided according to step a). Preparing and/or providing a immunostimulatory complexed single-stranded RNA as defined above according to step a) of the in vitro or in vivo transfection method for transfecting cells or a tissue with the immunostimulatory complexed single-stranded RNA of the present invention, may be carried out by any method known in the art.
An immunostimulatory complexed single-stranded RNA as used herein comprises at least one RNA complexed with one or more oligopeptides having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x. Preparing and/or providing a immunostimulatory complexed single-stranded RNA as defined above according to step a) may thus comprise the preparation and/or provision of the least one RNA and the one or more oligopeptides having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x. Preparing and/or providing the at least one RNA (molecule) as component of the inventive complex as defined above may comprise according to step a) a first sub-step a1), namely provision and/or preparation of a nucleic acid template, which typically comprises a sequence corresponding to the desired RNA. The sequence of the nucleic acid template may be any nucleic acid, e.g. A single- or double-stranded DNA, cDNA, genomic DNA or fragments thereof, etc., which may code for a therapeutically active protein, an antibody or an antigene, or any other protein or peptide as described above. Typically, DNA sequences, e.g. DNA plasmids, preferably in linearized form, may be employed for this purpose.
Preferably, the sequence of the nucleic acid template may be an (expression) vector, more preferably an (expression)vector having an RNA polymerase binding site. Any (expression) vectors known in the prior art, e.g. Commercially available (expression) vectors (see above), can be used for this.
Preferred (expression) vectors are, for example, those which have an SP6 or a T7 or T3 binding site upstream and/or downstream of the cloning site. The vector may comprise a nucleic acid sequence encoding a therapeutically active protein, an antibody or an antigen, or any other protein or peptide as described above, which is typically cloned into the (expression) vector, e.g.
Via a multiple cloning site of the vector used. Prior to transcription the (expression) vector is typically cleaved with restriction enzymes at the site at which the future 3' end of the RNA is to be found, using a suitable restriction enzyme, and the fragment is purified. This prevents the transcribed RNA from containing vector sequences, and an RNA transcript of defined length may be obtained. In this context, preferably no restriction enzymes which generate overhanging ends (such as, e.g., AatII, ApaI, BanII, BglI, Bsp1286, BstXI, CfoI, HaeII, HgiAI, HhaI, KpnI, PstI, PvuI, SacI, SacII, SfiI, SphI, etc.) are used.
Should such restriction enzymes nevertheless be used, the overhanging 3' end preferably may be filled up, e.g. With Klenow or T4 DNA polymerase. As an alternative to the above, the nucleic acid template used for preparing and/or providing the at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the invention, may be prepared by employing a polymerase chain reaction (PCR). The nucleic acid template preferably and one of the primers used therefore, typically contains the sequence of an RNA polymerase binding site. Furthermore, the 5' end of the primer used preferably contains an extension of about 10 - 50 further nucleotides, more preferably of from 15 to 30 further nucleotides and most preferably of about 20 nucleotides.
The nucleic acid template may be then incubated in the in vitro transcription medium and is transcribed to the at least one RNA (molecule) of the complexed RNA of the invention, which may encode for a therapeutically active protein, an antibody or an antigene, or any other protein or peptide as described above. The incubation times are typically about 30 to 240 minutes, preferably about 40 to 120 minutes and most preferably about 90 minutes. The incubation temperatures are typically about 30-45 °C, preferably 37-42 °C. The incubation temperature depends on the RNA polymerase used, e.g. For T7 RNA polymerase it is about 37 °C. The at least one RNA (molecule) of the complexed RNA of the invention obtained by the transcription is preferably an mRNA. The yields obtained in the in vitro transcription are, for the stated starting amounts employed above, typically in the region of about 30 µg of RNA per µg of template DNA used.
In the context of the present invention, the yields obtained in the in vitro transcription can be increased by linear up scaling. For this, the stated starting amounts employed above are preferably increased according to the yields required, e.g. By a multiplication factor of 5, 10, 50, 100, 500, 1,000, 5,000, 10,000, 50,000, 100,000 etc. After incubation, a purification of the transcribed at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the invention can optionally take place. Any suitable method known in the prior art, e.g. Chromatographic purification methods, e.g.
Affinity chromatography, gel filtration etc., can be used for this. By the purification, non-incorporated, i.e. Excess nucleotides and template DNA can be removed from the in vitro transcription medium and a clean RNA can be obtained. For example, after the transcription the reaction mixture with the transcribed RNA can typically be digested with DNase in order to remove the DNA template still contained in the reaction mixture.
The transcribed at least one RNA (molecule) of the immunostimulatory complexed single-stranded RNA of the invention can be subsequently or alternatively precipitated with LiCl. Purification of the transcribed RNA can then take place via IP RP-HPLC. This renders in particular effective separation of longer and shorter fragments from one another possible. Preferably, in this context purification of the RNA may take place via a method for purification of RNA on a preparative scale, which is distinguished in that the RNA is purified by means of HPLC using a porous reverse phase as the stationary phase (PURE Messenger). For example, for the purification a reverse phase can be employed as the stationary phase for the HPLC purification.
For the chromatography with reverse phases, a non-polar compound typically serves as stationary phases, and a polar solvent, such as mixtures of water, which is usually employed in the form of buffers, with acetonitrile and/or methanol, serves as the mobile phase for the elution. Preferably, the porous reverse phase has a particle size of 8.0 ± 2 µm, preferably ±1 µm, more preferably +/- 0.5 µm. The reverse phase material can be in the form of beads. The purification can be carried out in a particularly favourable manner with a porous reverse phase having this particle size, optionally in the form of beads, particularly good separation results being obtained. The reverse phase employed is preferably porous since with stationary reverse phases which are not porous, such as are described e.g. By Azarani A.
And Hecker K.H., pressures which are too high are built up, so that preparative purification of the RNA is possible, if at all, only with great difficulty. The reverse phase preferably has a pore size of from 200 to 5,000 in particular a pore size of from 300 to 4,000. Particularly preferred pore sizes for the reverse phases are 200 - 400, 800 - 1,200 and 3,500 - 4,500. With a reverse phase having these pore sizes, particularly good results are achieved in respect of the purification of the transcribed RNA. The material for the reverse phase is preferably a polystyrene-divinylbenzene, and non-alkylated polystyrene-divinylbenzenes can be employed in particular. Stationary phases with polystyrene-divinylbenzene are known per se. For the purification, the polystyrene-divinylbenzenes which are known per se and already employed for HPLC methods and are commercially obtainable can be used.
A non-alkylated porous polystyrene-divinylbenzene which in particular has a particle size of 8.0 ± 0.5 µm and a pore size of 250 - 300, 900 - 1,100 or 3,500 - 4,500 is very particularly preferably used for the purification. The advantages described above can be achieved in a particularly favourable manner with this material for the reverse phases. The HPLC purification can be carried out by the ion pair method, an ion having a positive charge being added to the mobile phase as a counter-ion to the negatively charged RNA. An ion pair having a lipophilic character, which is slowed down by the non-polar stationary phase of the reverse phase system, is formed in this manner.
In practice, the precise conditions for the ion pair method must be worked out empirically for each specific separation problem. The size of the counter-ion, its concentration and the pH of the solution contribute greatly towards the result of the separation. In a favourable manner, alkylammonium salts, such as triethylammonium acetate and/or tetraalkylammonium compounds, such as tetrabutylammonium, are added to the mobile phase. Preferably, 0.1 M triethylammonium acetate is added and the pH is adjusted to about 7.
The choice of mobile phase depends on the nature of the desired separation. This means that the mobile phase found for a specific separation, such as can be known, for example, from the prior art, cannot be transferred readily to another separation problem with adequate prospect of success. The ideal elution conditions, in particular the mobile phase used, must be determined for each separation problem by empirical experiments. A mixture of an aqueous solvent and an organic solvent can be employed as the mobile phase for elution of the RNA by the HPLC method. In this context, it is favourable if a buffer which has, in particular, a pH of about 7, for example 6.5 - 7.5, e.g. 7.0, is used as aqueous solvent; preferably, the buffer triethylammonium acetate is used, particularly preferably a 0.1 M triethylammonium acetate buffer which, as described above, also acts as a counter-ion to the RNA in the ion pair method.
The organic solvent employed in the mobile phase can be acetonitrile, methanol or a mixture of these two, very particularly preferably acetonitrile. The purification of the RNA using an HPLC method as described is carried out in a particularly favourable manner with these organic solvents. The mobile phase is particularly preferably a mixture of 0.1 M triethylammonium acetate, pH 7, and acetonitrile. It has emerged to be likewise particularly favourable if the mobile phase contains 5.0 vol.% to 20.0 vol.% of organic solvent, based on the mobile phase, and the remainder to make up 100 vol.% is the aqueous solvent. It is very particularly favourable for the method according to the invention if the mobile phase contains 9.5 vol.% to 14.5 vol.% of organic solvent, based on the mobile phase, and the remainder to make up 100 vol.% is the aqueous solvent.
Elution of the RNA can subsequently be carried out isocratically or by means of a gradient separation. In the case of an isocratic separation, elution of the RNA is carried out with a single eluting agent or a mixture of several eluting agents which remains constant, it being possible for the solvents described above in detail to be employed as the eluting agent. Alternatively, the at least one RNA (molecule) according to step a) of the method of transfection may well be prepared by chemical synthesis. Hereby, various methods known in the art may be used.
The phosphoroamidite method is used most widely as a method of chemically synthesizing oligonucleotides, e.g. RNA fragments ( Nucleic Acid Research, 17:7059-7071, 1989). In general, this phosphoroamidite method makes use of a condensation reaction between a nucleoside phosphoroamidite and a nucleoside as a key reaction using tetrazole as an accelerator. Because this reaction usually occurs competitively on both the hydroxyl group in a sugar moiety and the amino group in a nucleoside base moiety, the selective reaction on only the hydroxyl group in a sugar moiety is required to synthesize a desired nucleotide. Accordingly, the side reaction on the amino group is usually prevented by protecting the amino group.
The protective group is removed when synthesis is finished. More secific information about how to synthesize RNA molecules may be retrieved from Arnold et al., ' Nucleic Acids Symposium Series, 18, 181-184 (Aug. 30, 1987); Chemical Abstracts, 108(19), p. 167875z (May 9, 1988); Hayakawa et al., ' J. Organic Chemistry, 61(23), 7996-7997 (Nov.); Pirrung et al., ' J.
Organic Chemistry, 63(2), 241-246 (Jan. 23, 1998); Effenberger et al., Trifluoromethanesulfonic Imidazolide--A Convenient Reagent for Introducing the Triflate Group, Tetrahedron Letters, 1980 (45), 3947-3948 (Sep. Preparation of the immunostimulatory complexed single-stranded RNA according to step a) of the present invention typically occurs according to sub-step a3) by adding a specific amount of the at least one RNA (molecule) to a specific amount to the one or more oligopeptides having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x.
Thereby, molar or mass ratios as indicated above of the at least one RNA (molecule) and the one or more oligopeptides having the herein defined empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x are typically envisaged. Complex formation typically occurs upon mixing both components.
Therby, the peptidic component is typically added o the RNA component, in some cases, however, vice versa. Such a preparation step according to method step a), however, is optional and may not take place if the immunostimulatory complexed single-stranded RNA according to the present invention is already available. Accordingly, sub-steps a1), a2) and a3) as defined above are also optional and need not to be carried out, if the RNA used for the immunostimulatory complexed single-stranded RNA is already available. Similarly, the one or more oligopeptides having the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x may be used directly and need not to be prepared, if already available, e.g.
From a supplier. According to step b) of the method for transfecting cells or tissues in vitro or in vivo a cell or a tissue may be transfected using the immunostimulatory complexed single-stranded RNA provided and/or prepared according to step a). Transfection of the cells or tissues in vitro or in vivo is in general carried out by adding the immunostimulatory complexed single-stranded RNA provided and/or prepared according to step a) to the cells or tissue. Preferably, the immunostimulatory complexed single-stranded RNA then enters into the cells by using cellular mechanisms, e.g. Addition of the immunostimulatory complexed single-stranded RNA as such to the cells or tissues may occur without addition of any further components due to the transfectional potential of the immunostimulatory complexed single-stranded RNA (molecule) of the invention. Alternatively, addition of the immunostimulatory complexed single-stranded RNA provided and/or prepared according to step a) to the cells or tissue may occur in the form of a composition, e.g. As component of an aqueous solution, preferably a pharmaceutical composition as defined above, which may optionally contain additional components for further enhancement of the transfection activity.
Cells (or host cells) in this context for transfection of the immunostimulatory complexed single-stranded RNA (provided and/or prepared according to step a)) in vitro includes any cell, and preferably, with out being restricted thereto, cells, which shall be transfected by any RNA molecule (as defined above) by using the inventive immunostimulatory complexed single-stranded RNA. In particular, RNA transfection may allow for expression of a protein encoded by the RNA of the complexed RNA according to the invention in the cell or may allow RNA (e.g.
SiRNA, anti-sense RNA) of the inventive complex to attenuate or suppress the expression of a cellular gene. Cells in this context preferably include cultured eukaryotic cells (e.g. Yeast cells, plant cells, animal cells and human cells) or prokaryotic cells (e.g. Bacteria cells etc.) or induce an immune response. Cells of multicellular organisms are preferably chosen if posttranslational modifications, e.g. Glycosylation of the encoded protein, are necessary (N- and/or O-coupled).
In contrast to prokaryotic cells, such (higher) eukaryotic cells render posttranslational modifications of the protein synthesized possible. The person skilled in the art knows a large number of such higher eukaryotic cells or cell lines, e.g. 293T (embryonal kidney cell line), HeLa (human cervix carcinoma cells), CHO (cells from the ovaries of the Chinese hamster) and further cell lines, including such cells and cell lines developed for laboratory purposes, such as, for example, hTERT-MSC, HEK293, Sf9 or COS cells. Suitable eukaryotic cells furthermore include cells or cell lines which are impaired by diseases or infections, e.g. Cancer cells, in particular cancer cells of any of the types of cancer mentioned here in the description, cells impaired by HIV, and/or cells of the immune system or of the central nervous system (CNS). Suitable cells can likewise be derived from eukaryotic microorganisms, such as yeast, e.g. Saccharomyces cerevisiae ( Stinchcomb et al., Nature, 282:39, (1997)), Schizosaccharomyces pombe, Candida, Pichia, and filamentous fungi of the genera Aspergillus, Penicillium, etc.
Suitable cells likewise include prokaryotic cells, such as e.g. Bacteria cells, e.g. From Escherichia coli or from bacteria of the general Bacillus, Lactococcus, Lactobacillus, Pseudomonas, Streptomyces, Streptococcus, Staphylococcus, preferably E. Human cells or animal cells, e.g. Of animals as mentioned herein, are particularly preferred as eukaryotic cells. Furthermore, antigen presenting cells (APCs) may be used for ex vivo transfection of the complexed RNA according to the present invention. Particularly preferred are dendritic cells, which may be used for ex vivo transfection of the immunostimulatory complexed single-stranded RNA according to the present invention.
According to a particularly preferred embodiment, blood cells and/or haemopoietic cells, or partial populations thereof, i.e. Any type of cells, which may be isolated from (whole) blood and/or which may be derived from cultivated cell lines derived from those cells, may be transfected with a immunostimulatory complexed single-stranded RNA as defined herein using the above method of transfection, e.g. Red blood cells (erythrocytes), granulocytes, mononuclear cells (peripheral blood mononuclear cells, PBMCs) and/or blood platelets (thrombocytes), APSs, DCs, etc. Preferably, blood cells are used, especially partial populations thereof, which are characterized in particular in that they contain a small proportion of well-differentiated professional APCs, such as DCs.
The transfected cells may contain preferably less than 5%, particularly preferably no more than 2%, of DCs when used for transfection. In the context of the present invention 'blood cells' are preferably understood as a mixture or an enriched to substantially pure population of red blood cells, granulocytes, mononuclear cells (PBMCs) and/or blood platelets from whole blood, blood serum or another source, e.g. From the spleen or lymph nodes, only a small proportion of professional APCs being present.
The blood cells as used according to the present invention are preferably fresh blood cells, i.e. The period between collection of the blood cells (especially blood withdrawal) and transfection being only short, e.g. Less than 12 h, preferably less than 6 h, particularly preferably less than 2 h and very particularly preferably less than 1 h. Furthermore, the blood cells to be transfected using the above method for transfecting the immunostimulatory complexed single-stranded RNA according to the present invention preferably originate from the actual patient who will be treated with the pharmaceutical composition of the present invention.
The use of blood cells, haematopoietic cells or partial populations thereof as defined above is based on the surprising discovery that for vaccination of a patient to be treated against certain antigens encoded by an mRNA as defined herein, it is not necessary to differentiate blood cells, e.g. PBMCs, obtained e.g.
From the blood of an individual, especially the actual patient to be treated, by means of laborious, lengthy and expensive cell culture techniques, into a population of cells with a high proportion of professional antigen presenting cells (APCs), especially dendritic cells (DCs), but that it is sufficient, for a successful immune stimulation, to transfect blood cells directly with the mRNA coding for one or more antigens in order to obtain a pharmaceutical composition which effects a suitable immune stimulation e.g. In the actual patient from whom the blood cells, especially the abovementioned partial populations thereof, have been obtained, said immune stimulation preferably being directed against one or more antigens from a tumour or one or more antigens from a pathogenic germ or agent. Transfection of a immunostimulatory complexed single-stranded RNA as defined herein into blood cells or cells derived therefrom (either isolated therefrom or from respective cultivated cell lines) is not limited to antigens and, of course, relates to any RNA as defined herein used for a immunostimulatory complexed single-stranded RNA, e.g. Any further immunostimulating RNA as defined herein, any coding RNA, etc. While there is the need to transfect cultivated cells in vitro (e.g. Human or animal cells) or to transfect explanted cells (e.g. Human or animal cells) in vitro (before retransplantation into the host organism), direct administration of the complexed RNA of the invention to patients for in vivo transfection is envisaged as well.
Accordingly, transfection of the immunostimulatory complexed single-stranded RNA (provided and/or prepared according to step a)) may also occur in vivo according to step b), i.e. May be administered to living tissues and/or organisms. Therefore, the immunostimulatory complexed single-stranded RNA provided according to step a) of the transfection method may be administered to a living tissue or an organism either as such or e.g. As component of a (liquid) composition, in particular an aqueous composition, e.g. A pharmaceutical composition as defined above. In this context, an organism (or a being) typically means mammals, selected from, without being restricted thereto, the group comprising humans, and animals, including e.g. Pig, goat, cattle, swine, dog, cat, donkey, monkey, ape or rodents, including mouse, hamster and rabbit.
Furthermore, living tissues as mentioned above, are preferably derived from these organisms. Administration of the immunostimulatory complexed single-stranded RNA to those living tissues and/or organisms may occur via any suitable administration route, e.g. Systemically, and include e.g.
Intra- or transdermal, oral, parenteral, including subcutaneous, intramuscular or intravenous injections, topical and/or intranasal routes as defined above. Moreover, the method for transfection, which may be used in vitro or ex vivo, may also be well suited for use in vivo, e.g. As method of treatment of various diseases as mentioned herein.
In a preferred form of a method of treatment according to the invention a further step may be included, which may contain administration of another pharmaceutically effective substance, e.g. An antibody, an antigen (in particular a pathogenic or a tumor antigen as disclosed herein) or the administration of at least one cytokine. Both may be administered separately from the immunostimulatory complexed single-stranded RNA as DNA or RNA coding for e.g.
The cytokine or the antigen or the cytokine or antigen may be administered as such. The method of treatment may also comprise the administration of an additional adjuvant (as disclosed herein), which may further activate the immune system. According to a further embodiment of the present invention, the immunostimulatory complexed single-stranded RNA as defined above, comprising at least one RNA complexed with one or more oligopeptides, wherein the oligopeptide shows a length of 8 to 15 amino acids and has the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x, may be used for treatment and/or prophylaxis of specific diseases as mentioned herein.
Treatment and/or prophylaxis of specific diseases is typically dependent on selection of a suitable protein encoded by the RNA of the immunostimulatory complexed single-stranded RNA of the present invention. Treatment in this context may occur either by administering the immunostimulatory complexed single-stranded RNA according to the present invention (encoding this protein) as such or by administering the (pharmaceutical) composition according to the present invention as defined above. Diseases or states may also include in this context an allergic disorder or disease.
Allergy is a condition that typically involves an abnormal, acquired immunological hypersensitivity to certain foreign antigens or allergens. Allergies normally result in a local or systemic inflammatory response to these antigens or allergens and leading to an immunity in the body against these allergens. Allergens in this context include e.g.
Grasses, pollens, molds, drugs, or numerous environmental triggers, etc. Without being bound to any theory, several different disease mechanisms are supposed to be involved in the development of allergies. According to a classification scheme by P. Coombs the word 'allergy' was restricted to type I hypersensitivities, which are caused by the classical IgE mechanism. Type I hypersensitivity is characterised by excessive activation of mast cells and basophils by IgE, resulting in a systemic inflammatory response that can result in symptoms as benign as a runny nose, to life-threatening anaphylactic shock and death. Well known types of allergies include, without being limited thereto, allergic asthma (leading to swelling of the nasal mucosa), allergic conjunctivitis (leading to redness and itching of the conjunctiva), allergic rhinitis ('hay fever'), anaphylaxis, angiodema, atopic dermatitis (eczema), urticaria (hives), eosinophilia, respiratory, allergies to insect stings, skin allergies (leading to and including various rashes, such as eczema, hives (urticaria) and (contact) dermatitis), food allergies, allergies to medicine, etc. With regard to the present invention, e.g.
A pharmaceutical composition is provided, which contains e.g. An RNA coding for an allergen (e.g.
From a cat allergen, a dust allergen, a mite antigen, a plant antigen (e.g. A birch antigen) etc.) as a complex of the invention. Hereby, the encoded allergen may desensitize the patient' immune response.
Alternatively, the pharmaceutical compositions of the present invention may shift the (exceeding) immune response to a stronger TH1 response, thereby suppressing or attenuating the undesired IgE response from the the patient suffers. While the exact mode as to why the immune system induces an immune reaction against autoantigens has not been elucidated so far, there are several findings with regard to the etiology.
Accordingly, the autoreaction may be due to a T-Cell Bypass. A normal immune system requires the activation of B-cells by T-cells before the former can produce antibodies in large quantities. This requirement of a T-cell can be by-passed in rare instances, such as infection by organisms producing super-antigens, which are capable of initiating polyclonal activation of B-cells, or even of T-cells, by directly binding to the -subunit of T-cell receptors in a non-specific fashion. Another explanation deduces autoimmune diseases from a molecular mimicry. An exogenous antigen may share structural similarities with certain host antigens; thus, any antibody produced against this antigen (which mimics the self-antigens) can also, in theory, bind to the host antigens and amplify the immune response.
The most striking form of molecular mimicry is observed in Group A beta-haemolytic streptococci, which shares antigens with human myocardium, and is responsible for the cardiac manifestations of rheumatic fever. The present invention allows therefore to provide an RNA coding for an autoantigen as component of the immunostimulatory complexed single-stranded RNA of the invention (or a (liquid) composition containing such a complexed RNA of the invention) or to provide a pharmaceutical composition containing an autoantigen (as protein, mRNA or DNA encoding for a autoantigen protein) and a immunostimulatory complexed single-stranded RNA of the invention all of which typically allow the immune system to be desensitized. Finally, diseases to be treated in the context of the present invention likewise include monogenetic diseases, i.e. (hereditary) diseases, or genetic diseases in general.
Such genetic diseases are typically caused by genetic defects, e.g. Due to gene mutations resulting in loss of protein activity or regulatory mutations which do not allow transcription or translation of the protein.
Frequently, these diseases lead to metabolic disorders or other symptoms, e.g. Muscle dystrophy. Accordingly, the present invention allows to treat these diseases by providing the immunostimulatory complexed single-stranded RNA as defined herein. The present invention also allows treatment of diseases, which have not been inherited, or which may not be summarized under the above categories.
Such dieseases may include e.g. The treatment of patients, which are in need of a specific protein factor, e.g.
A specific therapeutically active protein as mentioned above. This may e.g.
Include dialysis patients, e.g. Patients which undergo a (regular) a kidney or renal dialysis, and which may be in need of specific therapeutically active proteins as defined above, e.g. Erythropoietin (EPO), etc.
According to one further embodiment, the present invention comprises the use of at least one immunostimulatory complexed single-stranded RNA according to the present invention (for the preparation of an agent) for the treatment of any of the above mentioned diseases, disorders, conditions or pathological states. An agent in this context may be e.g. A pharmaceutical composition as defined above or an injection buffer as defined herein, additionally containing the inventive immunostimulatory complexed single-stranded RNA, a vaccine, etc.
If more than one immunostimulatory complexed single-stranded RNA molecule type is used, the immunostimulatory complexed single-stranded RNAs may be different by their RNA (molecules) thereby forming a mixture of at least two distinct immunostimulatory complexed single-stranded RNA (molecule) types. If more than one immunostimulatory complexed single-stranded RNA is used (for the preparation of an agent) for the treatment of any of the above mentioned diseases the same or (at least two) different RNA (molecule) types may be contained in these immunostimulatory complexed single-stranded RNA mixtures. In this context, any of the above mentioned RNA (molecules) may be used for the inventive immunostimulatory complexed single-stranded RNA, e.g. A short RNA oligonucleotide, a coding RNA, an immunostimulatory RNA, a siRNA, an antisense RNA, or riboswitches, ribozymes or aptamers, etc.
More preferably a coding RNA (molecule), even more preferably a linear coding RNA (molecule), and most preferably an mRNA may be used. Preferably, such a coding RNA (molecule), more preferably a linear coding RNA (molecule), and more preferably an mRNA is used for the immunostimulatory complexed single-stranded RNA, the RNA (molecule) typically encodes a protein or peptide suitable for the therapy of the specific disease, e.g. An antibody, which is cabable of binding to a specific cancer antigen, or a tumor antigen, when treating a (specific) cancer, etc. The combinations of suitable RNA (molecules) are known to a skilled person from the art and from the disclosure of the present invention. According to another embodiment of the present invention, it may be preferred to (additionally) elicit, e.g.
Induce or enhance, an immune response during therapy. In this context, an immune response may occur in various ways.
A substantial factor for a suitable immune response is the stimulation of different T-cell sub-populations. T-lymphocytes are typically divided into two sub-populations, the T-helper 1 (Th1) cells and the T-helper 2 (Th2) cells, with which the immune system is capable of destroying intracellular (Th1) and extracellular (Th2) pathogens (e.g. The two Th cell populations differ in the pattern of the effector proteins (cytokines) produced by them. Thus, Th1 cells assist the cellular immune response by activation of macrophages and cytotoxic T-cells.
Th2 cells, on the other hand, promote the humoral immune response by stimulation of the B-cells for conversion into plasma cells and by formation of antibodies (e.g. Against antigens). The Th1/Th2 ratio is therefore of major importance for the immune response. For various diseases to be treated by the present invention, the Th1/Th2 ratio of the immune response is preferably shifted in the direction towards the cellular response (Th1 response) and a cellular immune response is thereby induced. Accordingly, the present invention may also be used to revert this immune response shift.
Therefore, the present invention encompasses also the use of at least one immunostimulatory complexed single-stranded RNA according to the present invention (for the preparation of an agent) for the treatment of any of the above mentioned diseases, wherein the agent (and/or the immunostimulatory complexed single-stranded RNA) may be capable to elicit, e.g. Induce or enhance, an immune response in a tissue or an organism as defined above.
Again, an agent in this context may be e.g. A pharmaceutical composition as defined above, or an injection buffer as defined herein, which contains the inventive immunostimulatory complexed single-stranded RNA, etc. If more than one immunostimulatory complexed single-stranded RNA type is used in this context (for the preparation of an agent) for the treatment of any of the above mentioned diseases, the immunostimulatory complexed single-stranded RNA types may be different with respect to their RNA (molecules) and may form a mixture of distinct RNA types.
However, for the present embodiment, it is preferred that at least one of these immunostimulatory complexed single-stranded RNAs induces or enhances the immune response during therapy. In this context, any of the above mentioned RNA (molecules) may be used for the inventive immunostimulatory complexed single-stranded RNA, e.g. A short RNA oligonucleotide, a coding RNA, immunostimulatory RNA, an siRNA, an antisense RNA, or riboswitches, ribozymes or aptamers, etc.
More preferably, a coding RNA (molecule), even more preferably a linear coding RNA (molecule), and most preferably an mRNA may be used for the immunostimulatory complexed single-stranded RNA. If the RNA (molecule) is a coding RNA (molecule), more preferably a linear coding RNA (molecule), and more preferably an mRNA, it typically encodes a protein or peptide suitable for the therapy of the specific disease, e.g. An antibody, which is cabable of binding to a specific cancer antigen, when treating a (specific) cancer, etc. If more than one immunostimulatory complexed single-stranded RNA is contained in the agent, different combinations of proteins or peptides may be selected. Such combinations of suitable RNA (molecules) (and, if a coding RNA is used, of encoded proteins or peptides) are known to a skilled person from the art or may be combined from RNAs encoding therapeutically effective proteins, etc., as defined in the disclosure of the present invention.
Induction or enhancement of the immune response concurrent to the treatment of a specific disease using one pharmaceutical composition or agent as defined above may be particularly advantageous in cases where an induced or enhanced immune response supports the treatment of a specific disease as mentioned above. Alternatively, treatment of the disease and induction or enhancement of the immune response may be carried out by using different pharmaceutical compositions or agents as defined above in a time staggered manner. One may induce or enhance the immune response by administering a pharmaceutical composition or an agent as defined herein, containing an inventive immunostimulatory complexed single-stranded RNA, prior to (or concurrent to) administering another pharmaceutical composition or an agent as defined herein which may contain an inventive immunostimulatory complexed single-stranded RNA, e.g. A short RNA oligonucleotide, a coding RNA, an immunostimulatory complexed single-stranded RNA, a siRNA, an antisense RNA, or riboswitches, ribozymes or aptamers, etc., which is suitable for the therapy of the specific disease. According to one embodiment, the present invention furthermore comprises the use of at least one immunostimulatory complexed single-stranded RNA according to the present invention (for the preparation of an agent) for modulating, preferably to induce or enhance, an immune response in a tissue or an organism as defined above, more preferably to support a disease or state as mentioned herein. Hereby, the inventive immunostimulatory complexed single-stranded RNA may be used to activate the immune system unspecifically, e.g.
To trigger the production of certain cytokines. The immunostimulatory complexed single-stranded RNA may therefore be used to support the specific immune response, which is elicited by e.g. An antigen derived from pathogens or tumors. An agent in this context may be e.g. A pharmaceutical composition as defined above or an injection buffer as defined herein, containing the inventive immunostimulatory complexed single-stranded RNA, a vaccine, etc.
The immune response may be modulated either by the at least one immunostimulatory complexed single-stranded RNA due to the one or more oligopeptides having a length of 8 to 15 amino acids and showing the empirical formula (Arg) l;(Lys) m;(His) n;(Orn) o;(Xaa) x, and/or by the immunostimulatory properties of the protein encoded by the RNA of the immunostimulatory complexed single-stranded RNA. The present invention may therefore, whenever appropriate, well serve to achieve various objects. An immunostimulatory complexed single-stranded RNA as such or as a component of an inventive composition may by itself improve the transfection properties of the RNA as component of the inventive complex. This underlying property of the inventive immunostimulatory complexed single-stranded RNA is beneficial to a wide variety of applications.
Whenever it is intended to introduce an RNA into a cell, improved transfection efficacy is ensured by the present invention. This property as such may allow the present invention to be used for the treatment of a huge variety of diseases, e.g. The treatment of monogenetic or genetic diseases as defined above. In addition, the present invention may be used whenever treatment of immune disorders, e.g. Allergies or autoimmune diseases, is envisaged. Moreover, the present invention may activate the patients's immune system by enhancing its unspecific or specific immune response. Accordingly, it may elicit an unspecific immune response, whenever appropriate, to cure a disease.
And, whenever required, it may elicit a specific immune response as such (e.g. By encoding an antigen by the RNA as component of the inventive complex) or by a combination of the inventive immunostimulatory complexed single-stranded RNA with an antigen, e.g. In the same composition. Whenever required, the inventive immunostimulatory complexed single-stranded RNA may be preferably an antigen or an antibody, or any other protein or peptide as defined above, capable of modulating the immune response (preferably of inducing or enhancing same or, in case of allergies or autoimmune diseases by desensitizing the patient's immune system towards a specific allergen or autoantigen).
In order to modulate, e.g. Induce or enhance, an immune response in a tissue or an organism the immunostimulatory complexed single-stranded RNA may be administered to this tissue or organism as defined above either as such or as an agent as defined above. The administration modes, which may be used, may be the same as described above for pharmaceutical compositions. Administration of the agent may occur prior, concurrent and/or subsequent to a therapy of diseases or states as mentioned herein, e.g. By administration of the agent prior, concurrent and/or subsequent to a therapy or an administration of a therapeutic suitable for these diseases or states. According to a final embodiment, the present invention also provides kits containing a immunostimulatory complexed single-stranded RNA according to the invention and/or a pharmaceutical composition according to the invention as well as, optionally, technical instructions with information on the administration and dosage of the immunostimulatory complexed single-stranded RNA according to the invention and/or the pharmaceutical composition according to the invention.
The kit may separately further comprise one or more of the following group of components: at least one antigen or at least one antibody or a composition containing an antigen or an antibody, an additional adjuvant or a composition containing at least one adjuvant and/or at least one cytokine or a composition containing at least one cytokine. The antigen, antibody and/or the cytokine may be provided as such (proteins) or may be provided as DNA or RNA coding for the antigen, antibody or cytokine. Such kits may be applied, e.g. For any of the above mentioned applications or uses, preferably for the use of at least one immunostimulatory complexed single-stranded RNA (for the preparation of an agent) for the treatment of any of the above mentioned diseases. The kits may also be applied for the use of at least one immunostimulatory complexed single-stranded RNA (for the preparation of an agent) for the treatment of any of the above mentioned diseases, wherein the agent (and/or the immunostimulatory complexed single-stranded RNA) may be capable to induce or enhance an immune response in a tissue or an organism as defined above. Such kits may further be applied for the use of at least one immunostimulatory complexed single-stranded RNA (for the preparation of an agent) for modulating, preferably to elicit, e.g. To induce or enhance, an immune response in a tissue or an organism as defined above, and preferably to support a disease or state as mentioned herein.
The following Figures are intended to illustrate the invention further. They are not intended to limit the subject matter of the invention thereto. Figure 1: depicts the sequence of a stabilized luciferase mRNA sequence, wherein the native luciferase encoding mRNA is modified with a poly-A/poly-C-tag (A70-C30).
This first construct (construct CAP-Ppluc(wt)-muag-A70-C30, SEQ ID NO: 35) contained following sequence elements: stabilizing sequences from the alpha-Globin gene, 70 × Adenosin at the 3'-terminal end (poly-A-tail), 30 × Cytosin at the 3'- terminal end (poly-C-tail); represented by following symbols: ___ = coding sequence. = 3'-UTR of the alpha globin gene.
= poly-A-tail ----- = poly-C-tail Figure 2: shows the sequence of a stabilized luciferase mRNA sequence, wherein the construct according to SEQ ID NO: 35 (see Figure 1) is further modified with a GC-optimized sequence for a better codon usage. The final construct (construct CAP-Ppluc(GC)-muag-A70-C30, SEQ ID NO: 36) contained following sequence elements: GC-optimized sequence for a better codon usage stabilizing sequences from the alpha-Globin gene 70 × Adenosin at the 3'-terminal end (poly-A-tail), 30 × Cytosin at the 3'- terminal end (poly-C-tail); represented by following symbols: ___ = coding sequence. = modified 3'-UTR of the alpha globin gene. = poly-A-tail _ _ _ _ _ = poly-C-tail Figure 3: shows the coding sequence of the sequence according to SEQ ID NO: 35 (SEQ ID NO: 37) (see Figure 1). Figure 4: shows the GC-optimized coding sequence of the sequence according to SEQ ID NO: 36 (SEQ ID NO: 38) (see Figure 2).
The GC-optimized codons are underlined. Figure 5: shows the immunostimulatory effect of RNA complexed with nona-arginine ((Arg) 9) in hPBMC cells by measuring IL-6 production. As can be seen, hPBMC cells show a significant IL-6 production, i.e.
A significant immunostimulatory effect of RNA complexed with nona-arginine ((Arg) 9), Figure 6: shows the immunostimulatory effect of RNA complexed with nona-arginine ((Arg) 9) in hPBMC cells by measuring TNF-alpha production. As can be seen, hPBMC cells show a significant TNF-alpha production, i.e. A significant immunostimulatory effect of RNA complexed with nona-arginine ((Arg) 9).
Figure 7: shows in an comparative example the comparison of immunostimulatory effects of RNA complexed with either nona-arginine ((Arg) 9) or poly-L-arginine, respectively, in hPBMCs. Advantagously, a significant immunostimulatory effect can be observed for mass ratios lower than 1:5 (RNA:nona-arginine) (1:10; 1:8; 1:5; 1:2; 1:1; 2:1). However, when using mass ratios of RNA:nona-arginine (5:1) no significant TNFalpha production can be observed. The same applies to stimulation experiments, using nona-arginine ((Arg) 9) or mRNA alone.
Additionally, it was observed, that complexation of mRNA with poly-L-arginine leads to significantly lower induction of TNF-alpha production in comparison to nona-arginine ((Arg) 9). Apparently, higher concentrations of poly-L-arginine appear to be toxic for cells transfected therewith, particularly when using a mass ratio of 1:2 RNA:poly-L-arginine:RNA or higher, since the cells were lysed. Figure 8: shows luciferase expression upon transfection of complexes of RNA with nona-arginine ((Arg) 9) in HeLa cells. As may be derived from Figure 8 a mass ratio of less than 2:1 (RNA:nona-arginine) appears to be advantageous. In contrast, complexation with (high molecular mass) poly-L-arginine does not lead to a significant luciferase-activity. Thus, (high molecular mass) poly-L-arginine does not appear to be suitable for transfection of mRNA.
Figure 9: depicts in a comparative example the luciferase expression upon transfection of complexes of RNA with hepta-arginine ((Arg) 7) in HeLa cells. As may be derived from Figure 9, transfection of complexes of RNA with hepta-arginine ((Arg) 7) does not lead to a significant luciferase-activity.
Thus, hepta-arginine ((Arg) 7) does also not appear to be suitable for transfection of mRNA. Figure 10: shows the immunostimulatory effect of RNA complexed with hepta-arginine ((Arg) 7) in hPBMC cells by measuring IL-6 production. As can be seen, hPBMC cells show a significant IL-6 production, i.e. A significant immunostimulatory effect of RNA complexed with hepta-arginine ((Arg) 7). Figure 11: shows the immunostimulatory effect of RNA complexed with hepta-arginine ((Arg) 7) in hPBMC cells by measuring TNF-alpha production. As can be seen, hPBMC cells show a significant TNF-alpha production, i.e. A significant immunostimulatory effect of RNA complexed with hepta-arginine ((Arg) 7).
Figure 12: shows the effect of RNA complexed with R9 peptide on the expression of luciferase in HeLa cells. Figure 13: shows the effect of RNA complexed with R9H3 peptide on the expression of luciferase in HeLa cells. Figure 14: shows the effect of RNA complexed with H3R9H3 peptide on the expression of luciferase in HeLa cells.
Figure 15: shows the effect of RNA complexed with YYYR9SSY peptide on the expression of luciferase in HeLa cells. Figure 16: shows the effect of RNA complexed with H3R9SSY peptide on the expression of luciferase in HeLa cells. Figure 17: shows the effect of RNA complexed with (RKH)4 peptide on the expression of luciferase in HeLa cells.
Figure 18: shows the effect, of RNA complexed with Y(RKH)2R peptide on the expression of luciferase in HeLa cells. Figure 19: shows the effect of Histidin in terminal positions on the transfection efficiacy. Figure 20: shows the effect of neutral amino acids in terminal positions on the transfection efficiacy. Figure 21: shows the immunostimulatory effect of RNA complexed with R9H3 on secretion of TNFalpha in hPBMCs. Figure 22: shows the immunostimulatory effect of RNA complexed with R9H3 on secretion of IL-6 in hPBMCs. 15 µg RNA stabilized luciferase mRNA according to SEQ ID NO: 36 (Luc-RNActive) were mixed in different mass ratios with nona-arginine (Arg 9) or poly-L-arginine (Sigma-Aldrich; P4663; 5000-15000 g/mol), thereby forming a complex.
Following mass ratios were used as shown exemplarily for ((Arg) 9). Poly-L-arginine was used for comparative examples following the same instructions. RNA (Arg) 9 (Arg) 9 (Arg) 9 RNA (Arg) 9 H 20 Concentration (Arg) 9 [µM] Ratio (Arg) 9/RNA µg µg µl µl µl 1 Mock 70,0 0 2 (Arg) 9 alone 150 3 67,0 151,32 3 RNA alone 15 3,8 66,3 0,00 4 1 10 15 150,0 3,8 3,0 63,3 151,32 10:1 5 1 8 15 120,0 3,8 2,4 63,9 121,06 8:1 6 1 5 15 75,0 3,8 1,5 64,8 75,66 5:1 7 1 2 15 30,0 3,8 0,6 65,7 30,26 2:1 8 1 1 15 15,0 3,8 15,0 51,3 15,13 1:1 9 2 1 15 7,5 3,8 7,5 58,8 7,57 1:2 10 5 1 15 3,0 3,8 3,0 63,3 3,03 1:5 11 8 1 15 1,9 3,8 1,9 64,4 1,89 1:8 12 10 1 15 1,5 3,8 1,5 64,8 1,51 1:10 •. Additionally, further complexed RNAs based on (Arg) 9 were prepared above using the following peptides for complexation: R9: Arg-Arg-Arg-Arg-Arg-Arg-Arg-Arg-Arg R9H3: Arg-Arg-Arg-Arg-Arg-Arg-Arg-Arg-Arg-His-His-His H3R9H3: His-His-His-Arg-Arg-Arg-Arg-Arg-Arg-Arg-Arg-Arg-His-His-His YSSR9SSY: Tyr-Ser-Ser-Arg-Arg-Arg-Arg-Arg-Arg-Arg-Arg-Arg-Ser-Ser-Tyr H3R9SSY: His-His-His-Arg-Arg-Arg-Arg-Arg-Arg-Arg-Arg-Arg-Ser-Ser-Tyr (RKH)4: Arg-Lys-His-Arg-Lys-His-Arg-Lys-His-Arg-Lys-His Y(RKH)2R: Tyr-Arg-Lys-His-Arg-Lys-His-Arg •. For complexation, 4 µg stabilized luciferase mRNA according to SEQ ID NO: 36 (Luc-RNActive) were mixed in molar ratios with the respectively peptide (according to formula I), thereby forming a complex. Afterwards the resulting solution was adjusted with water to a final volume of 50 µl und incubated for 30 minutes at room temperature.
The used ratios are indicated in the tables given below. HeLa-cells (150x10 3/well) were then seeded 1 day prior to transfection on 24-well microtiter plates leading to a 70% confluence when transfection was carried out. Hela-cells (150x10 3/well) were seeded 1 day prior to transfection on 24-well microtiter plates leading to a 70% confluence when transfection was carried out. For transfection (40 µl) 50 µl of the RNA/(peptide)-solution as disclosed in Example 3 were mixed with 250 µl serum free medium and added to the cells (final RNA concentration: 13 µg/ml).
Prior to addition of the transfection solution the HeLa-cells were washed gently and carefully 2 times with 1 ml Optimen (Invitrogen) per well. Then, the transfection solution (300 µl per well) was added to the cells and the cells were incubated for 4 h at 37°C. Subsequently 300 µl RPMI-medium (Camprex) containing 10% FCS was added per well and the cells were incubated for additional 20 h at 37°C. The transfection solution was sucked off 24 h after transfection and the cells were lysed in 300 µl lysis buffer (25 mM Tris-PO 4, 2 mM EDTA, 10% glycerol, 1% Triton-X 100, 2 mM DTT). The supernatants were then mixed with luciferin buffer (25 mM Glycylglycin, 15 mM MgSO 4, 5 mM ATP, 62,5 µM luciferin) and luminiscence was detected using a luminometer (Lumat LB 9507 (Berthold Technologies, Bad Wildbad, Germany)). The results of these experiments are shown in Figures 8 and 12 to 18.
Example 5 - Immune stimulation upon transfection of complexes of RNA with nona-arginine ((Arg) 9 ) or poly-L-arginine (Comparative Example) a) Transfection experiments•. HPBMC cells from peripheral blood of healthy donors were isolated using a Ficoll gradient and washed subsequently with 1xPBS (phophate-buffered saline). The cells were then seeded on 96-well microtiter plates (200x103/well).
The hPBMC cells were incubated for 24 h, as described under Example 4, supra, with 10 µl of the RNA/peptide complex (RNA final concentration: 6 µg/ml; the same amounts of RNA were used) in X-VIVO 15 Medium (BioWhittaker) (final RNA Concentration: 10 µg/ml). The immunostimulatory effect upon the hPBMC cells was measured by detecting the cytokine production (Interleukin-6 und Tumor necrose factor alpha). Therefore, ELISA microtiter plates (Nunc Maxisorb) were incubated over night (o/n) with binding buffer (0,02% NaN3, 15 mM Na2CO3, 15 mM NaHCO3, pH 9,7), additionally containing a specific cytokine antibody. Cells were then blocked with 1×PBS, containing 1% BSA (bovine serum albumin). The cell supernatant was added and incubated for 4 h at 37°C. Subsequently, the microtiter plate was washed with 1×PBS, 0,05% Tween-20 and then incubated with a Biotin-labelled secondary antibody (BD Pharmingen, Heidelberg, Germany). Streptavidin-coupled horseraddish peroxidase was added to the plate.
Then, the plate was again washed with 1×PBS, containing 0,05% Tween-20, and ABTS (2,2'-azino-bis(3-ethyl-benzthiazoline-6-sulfonic acid) was added as a substrate. The amount of cytokine was determined by measuring the absorption at 405 nm (OD405) using a standard curve with recombinant Cytokines (BD Pharmingen, Heidelberg, Germany) with the Sunrise ELISA-Reader from Tecan (Crailsheim, Germany).
B) Results i) Immunostimulatory effect of RNA complexed with nona-arginine ((Arg) 9 )•. • i1) HPBMC cells were incubated with RNA complexed with nona-arginine ((Arg) 9) for 24 h as disclosed above, wherein the mass ratio of RNA:(Arg) 9 was 1:1. Then, IL-6 production was measured in the cell supernatants using ELISA. As a result, HPBMC cells showed a significant IL-6 production, i.e. A significant immunostimulatory effect of RNA complexed with nona-arginine ((Arg) 9) (see Figure 5).
• i2) HPBMC cells were incubated with RNA complexed with nona-arginine ((Arg) 9) for 24 h as disclosed above, wherein the mass ratio of RNA:(Arg) 9 was 1:1. Then, THF-alpha production was measured in the cell supernatants using ELISA. As a result, HPBMC cells showed a significant TNF-alpha production, i.e. A significant immunostimulatory effect of RNA complexed with nona-arginine ((Arg) 9) (see Figure 6).
Ii) Comparison of immunostimulatory effect of RNA complexes with either nona-arginine ((Arg) 9) or poly-L-arginine, respectively (Comparative Example)•. Furthermore, complexation of mRNA with poly-L-arginine leads to significantly lower induction of TNF-alpha production in comparison to nona-arginine ((Arg) 9) (see Figure 7, right). Additionally, it was observed that higher concentrations of poly-L-arginine appear to be toxic for cells transfected therewith, particularly when using a mass ratio of 1:2 RNA:poly-L-arginine or lower, since the cells were lysed. Example 6 - Luciferase expression upon transfection of complexes of RNA with nona-arginine ((Arg) 9 ) or Poly-L-Arginine, respectively, in HeLa cells (Comparative Example)•. • a) Luciferase expression upon transfection of complexes of RNA with nona-arginine ((Arg) 9) in HeLa cells. HeLa-Cells were transfected with RNActive encoding luciferase, which has been complexed with different ratios of nona-arginine or Poly-L-Arginine, respectively. 24h later luciferase-activity was measured.
Apparently, a mass ration of less than 2:1 (RNA:nona-arginine) appears to be advantageous (see Figure 8). • b) In comparison, complexation with (high molecular mass) poly-L-arginine does not increase luciferase-activity at a significant level. Thus, (high molecular mass) poly-L-arginine does not appear to be suitable for transfection of mRNA (see Figure 8). Example 7 - Luciferase expression upon transfection of complexes of RNA with hepta-arginine ((Arg) 7 ) in HeLa cells (Comparative Example)•. HeLa-Cells were transfected with RNActive encoding luciferase, which has been complexed with different ratios of hepta-arginine ((Arg) 7). 24h later luciferase-activity was measured.
Apparently, complexation with hepta-arginine ((Arg) 7) does not increase luciferase-activity at a significant level. Thus, hepta-arginine ((Arg) 7) does not appear to be suitable for transfection of mRNA (see Figure 9). Example 8 - Immune stimulation upon transfection of complexes of RNA with hepta-arginine ((Arg) 7 ) (Comparative Example) a) Transfection experiments•. • i) HPBMC cells were incubated with RNA complexed with hepta-arginine ((Arg) 7) for 24 h as disclosed above, wherein the mass ratio of RNA:(Arg) 7 was 1:1. Then, IL-6 production was measured in the cell supernatants using ELISA. As a result, HPBMC cells showed a significant IL-6 production, i.e.
A significant immunostimulatory effect of RNA complexed with hepta-arginine ((Arg) 7) (see Figure 10). • ii) HPBMC cells were furthermore incubated with RNA complexed with hepta-arginine ((Arg) 7) for 24 h as disclosed above, wherein the mass ratio of RNA:(Arg) 7 was 1:1.
Then, THF-alpha production was measured in the cell supernatants using ELISA. As a result, HPBMC cells also showed a significant TNF-alpha production, i.e.
A significant immunostimulatory effect of RNA complexed with hepta-arginine ((Arg) 7) (see Figure 11). Example 9 - Determination of the effect of Histidin on the transfection efficiency•. To determine the effect of Histidin on the transfection efficiency a transfection was carried out analogously to the transfection experiments above using peptides with different Histidine content. Therefore, 4 µg stabilized luciferase mRNA according to SEQ ID NO: 36 (Luc-RNActive) were mixed in molar ratios with the respectively peptide (according to formula I), particularly R9, R9H3 or H3R9H3, thereby forming a complex. Afterwards the resulting solution was adjusted with water to a final volume of 50 µl und incubated for 30 minutes at room temperature. The used ratios are in each experiment 1:10000, 1:5000 and 1:1000. HeLa-cells (150x10 3/well) were then seeded 1 day prior to transfection on 24-well microtiter plates leading to a 70% confluence when transfection was carried out.
For transfection 50 µl of the RNA/(peptide)-solution were mixed with 250 µl serum free medium and added to the cells (final RNA concentration: 13 µg/ml). Prior to addition of the transfection solution the HeLa-cells were washed gently and carefully 2 times with 1 ml Optimen (Invitrogen) per well. Then, the transfection solution (300 µl per well) was added to the cells and the cells were incubated for 4 h at 37°C. Subsequently 300 µl RPMI-medium (Camprex) containing 10% FCS was added per well and the cells were incubated for additional 20 h at 37°C. The transfection solution was sucked off 24 h after transfection and the cells were lysed in 300 µl lysis buffer (25 mM Tris-PO 4, 2 mM EDTA, 10% glycerol, 1% Triton-X 100, 2 mM DTT). The supernatants were then mixed with luciferin buffer (25 mM Glycylglycin, 15 mM MgSO 4 5 mM ATP, 62,5 µM luciferin) and luminiscence was detected using a luminometer (Lumat LB 9507 (Berthold Technologies, Bad Wildbad, Germany)).
The effect of R9H3 on immunostimulation was tested in hPBMCs. Therefore, a complex of R9H3 and RNA as shown above in Example 3 was prepared.
Furthermore, HPBMC cells from peripheral blood of healthy donors were isolated using a Ficoll gradient and washed subsequently with 1×PBS (phophate-buffered saline). The cells were then seeded on 96-well microtiter plates (200×10 3/well). The hPBMC cells were incubated for 24 h, as described under Example 4, supra, with 10 µl of the RNA/peptide complex (RNA final concentration: 6 µg/ml; the same amounts of RNA were used) in X-VIVO 15 Medium (BioWhittaker). The immunostimulatory effect upon the hPBMC cells was measured by detecting the cytokine production (Interleukin-6 und Tumor necrose factor alpha). Therefore, ELISA microtiter plates (Nunc Maxisorb) were incubated over night (o/n) with binding buffer (0,02% NaN3, 15 mM Na2CO3, 15 mM NaHCO3, pH 9,7), additionally containing a specific cytokine antibody.
Cells were then blocked with 1×PBS, containing 1% BSA (bovine serum albumin). The cell supernatant was added and incubated for 4 h at 37°C. Subsequently, the microtiter plate was washed with 1×PBS, 0,05% Tween-20 and then incubated with a Biotin-labelled secondary antibody (BD Pharmingen, Heidelberg, Germany). Streptavidin-coupled horseraddish peroxidase was added to the plate. Then, the plate was again washed with 1×PBS, containing 0,05% Tween-20, and ABTS (2,2'-azino-bis(3-ethyl-benzthiazoline-6-sulfonic acid) was added as a substrate. The amount of cytokine was determined by measuring the absorption at 405 nm (OD405) using a standard curve with recombinant Cytokines (BD Pharmingen, Heidelberg, Germany) with the Sunrise ELISA-Reader from Tecan (Crailsheim, Germany).
The results are seen in Figures 21 and 22. As can be seen, a significant immunostimulation was exhibited at a ratio of 1:5000 RNA:R9H3.
SEQUENCE LISTING•. • 33 13 RNA Artificial • Beschreibung der Sequenz: Koszak-Sequenz (s. Beschreibung S.
31) • 33 gccgccacca ugg 13 • 34 15 RNA Artificial • Beschreibung der Sequenz: generische Sequenz einer Stabilisierungssequenz (s. Beschreibung S. 32) • misc_feature (1).(1) n = C oder U • misc_feature (5). (5) n = jedes natuerlich auftretende Nukleotid oder ein Analog davon • repeat_unit (5). (5) x = beliebig • misc_feature (9).
(9) n = U oder A • repeat_unit (10).(10) x = beliebig • modified_base (10).(10) n = pyrimidine • misc_feature (10).(10) n is a, c, g, or u • misc_feature (13).(13) n = C oder U • 34 nccancccnn ucncc 15 • 35 1882 RNA Artificial • description of sequence: construct CAP-Ppluc(wt)-muag-A70-C30 • 35. Referenced by Citing Patent Filing date Publication date Applicant Title 21 May 2013 4 Mar 2014 Moderna Therapeutics, Inc.
Method for producing a protein of interest in a primate 18 May 2013 25 Mar 2014 Moderna Therapeutics, Inc. Modified polynucleotides for the production of G-CSF 2 Apr 2012 29 Apr 2014 Moderna Therapeutics, Inc. Engineered nucleic acids encoding a modified erythropoietin and their expression 21 May 2013 17 Jun 2014 Moderna Therapeutics, Inc.
DLIN-KC2-DMA lipid nanoparticle delivery of modified polynucleotides 5 Aug 2011 2 Sep 2014 Moderna Therapeutics, Inc. Engineered nucleic acids and methods of use thereof 9 Mar 2013 7 Apr 2015 Moderna Therapeutics, Inc.
Modified polynucleotides for the production of biologics and proteins associated with human disease 16 Dec 2013 9 Jun 2015 Moderna Therapeutics, Inc. Modified polynucleotides encoding aryl hydrocarbon receptor nuclear translocator 3 Feb 2014 23 Jun 2015 Moderna Therapeutics, Inc. Modified polynucleotides for treating protein deficiency 3 Feb 2014 28 Jul 2015 Moderna Therapeutics, Inc. Modified polynucleotides for treating galactosylceramidase protein deficiency 12 Dec 2013 4 Aug 2015 Moderna Therapeutics, Inc.
Modified polynucleotides encoding copper metabolism (MURR1) domain containing 1 12 Dec 2013 18 Aug 2015 Moderna Therapeutics, Inc. Modified polynucleotides encoding basic helix-loop-helix family member E41 12 Dec 2013 25 Aug 2015 Moderna Therapeutics, Inc. Modified polynucleotides encoding citeD4 16 Dec 2013 6 Oct 2015 Moderna Therapeutics, Inc. Modified polynucleotides encoding septin-4 21 May 2013 17 Nov 2015 Moderna Therapeutics, Inc. Split dose administration 9 Mar 2013 24 Nov 2015 Moderna Therapeutics, Inc. Modified polynucleotides for the production of secreted proteins 16 Dec 2013 22 Dec 2015 Moderna Therapeutics, Inc. Modified polynucleotides encoding granulysin 13 Dec 2013 29 Dec 2015 Moderna Therapeutics, Inc.
Modified polynucleotides for the production of proteins associated with blood and lymphatic disorders 11 Dec 2013 29 Dec 2015 Moderna Therapeutics, Inc. Coolsat Serial Downloader more. Modified polynucleotides encoding aquaporin-5 15 Mar 2013 29 Dec 2015 Moderna Therapeutics, Inc.
In vivo production of proteins 12 Dec 2013 12 Jan 2016 Moderna Therapeutics, Inc. Modified polynucleotides for the production of proteins associated with blood and lymphatic disorders 9 Mar 2013 9 Feb 2016 Moderna Therapeutics, Inc.
Modified polynucleotides for the production of proteins 18 May 2013 1 Mar 2016 Moderna Therapeutics, Inc. Formulation and delivery of PLGA microspheres 23 Apr 2015 15 Mar 2016 Moderna Therapeutics, Inc. Modified polynucleotides for the production of nuclear proteins 18 May 2013 29 Mar 2016 Moderna Therapeutics, Inc. Formulation and delivery of PLGA microspheres 16 Dec 2013 5 Apr 2016 Moderna Therapeutics, Inc. Modified polynucleotides encoding apoptosis inducing factor 1 9 Mar 2013 5 Apr 2016 Moderna Therapeutics, Inc. Modified polynucleotides for the production of cytoplasmic and cytoskeletal proteins 11 Jan 2013 10 May 2016 Moderna Therapeutics, Inc. Modified nucleosides, nucleotides, and nucleic acids, and uses thereof 3 Oct 2012 30 Aug 2016 Moderna Therapeutics, Inc.
Modified nucleosides, nucleotides, and nucleic acids, and uses thereof 8 Oct 2015 20 Sep 2016 Moderna Therapeutics, Inc. Engineered nucleic acids and methods of use thereof 5 Nov 2014 11 Oct 2016 Moderna Therapeutics, Inc. Engineered nucleic acids and methods of use thereof 22 Jul 2014 3 Jan 2017 Modernatx, Inc. Delivery and formulation of engineered nucleic acids 2 Oct 2013 21 Mar 2017 Modernatx, Inc. Terminally modified RNA 13 Dec 2013 13 Jun 2017 Moderna Therapeutics, Inc. Modified polynucleotides encoding hepatitis A virus cellular receptor 2 8 Oct 2015 14 Nov 2017 Modernatx, Inc. Modified polynucleotides for the production of biologics and proteins associated with human disease.